Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC097460.3-201ENST00000623099 442 ntBASIC1.36□□□□□ -2.19
CCDC42Q96M95 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.36□□□□□ -2.19
CCDC42Q96M95 AC091812.1-201ENST00000432235 1948 ntBASIC1.36□□□□□ -2.19
CCDC42Q96M95 CDR1-202ENST00000625883 1485 ntBASIC1.36□□□□□ -2.19
CCDC42Q96M95 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC42Q96M95 MIR424-201ENST00000362227 98 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 RNU6-952P-201ENST00000391164 108 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 BTF3L4P2-201ENST00000392798 346 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL158053.1-201ENST00000441503 453 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 RPS29P29-201ENST00000456396 171 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 RN7SKP179-201ENST00000516126 217 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 RNU6-751P-201ENST00000516382 101 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 RNU6-678P-201ENST00000516832 109 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 RNU1-92P-201ENST00000517017 135 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 RNU6-667P-201ENST00000517186 102 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 AC090821.2-201ENST00000523552 176 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 CYCSP27-201ENST00000527643 293 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 SLC2A13P1-201ENST00000531560 322 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL161670.1-201ENST00000554348 137 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 LINC00557-201ENST00000563184 1279 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC42Q96M95 MIR6134-201ENST00000617606 109 ntBASIC1.35□□□□□ -2.19
CCDC42Q96M95 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC42Q96M95 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 AL590084.1-201ENST00000407885 387 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 MTATP6P30-201ENST00000443540 664 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC004223.1-201ENST00000479840 271 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC026414.1-201ENST00000504046 698 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 HMGB1P28-201ENST00000507778 552 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 RNU6-390P-201ENST00000516259 103 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 RNU6-1183P-201ENST00000517054 60 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC023825.1-201ENST00000566704 1030 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC42Q96M95 BBIP1P1-201ENST00000602999 279 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 RNU6-91P-201ENST00000607774 107 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC034229.4-201ENST00000607861 441 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 AC099063.3-201ENST00000642066 185 ntBASIC1.34□□□□□ -2.19
CCDC42Q96M95 ZNF29P-201ENST00000225587 168 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 SNORD115-3-201ENST00000363100 82 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC42Q96M95 MIR23A-201ENST00000385245 73 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 SNORA40.6-201ENST00000391153 128 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 OOSP1P1-201ENST00000423265 274 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 MTCO1P3-201ENST00000429327 192 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 NDUFAF4P2-201ENST00000445374 520 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 RNU6-775P-201ENST00000459318 96 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 AC116655.1-201ENST00000508324 901 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 RNU5B-3P-201ENST00000516601 115 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC42Q96M95 OR6C7P-201ENST00000547875 934 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC1.33□□□□□ -2.2
CCDC42Q96M95 MIR4303-201ENST00000581299 66 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC42Q96M95 AC026741.1-201ENST00000605892 482 ntBASIC1.33□□□□□ -2.2
CCDC42Q96M95 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC42Q96M95 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC42Q96M95 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 RNU11-3P-201ENST00000391111 133 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 RPL30P13-201ENST00000418873 348 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 HMGB1P27-201ENST00000431429 603 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 HMGB1P31-201ENST00000437242 427 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 snoU13.26-201ENST00000459452 105 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 RPL37P6-201ENST00000460682 294 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 RPL7P43-201ENST00000478876 753 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 AC139453.3-201ENST00000493276 369 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 RNU6-583P-201ENST00000516012 92 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 SNORA48.9-201ENST00000516419 162 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC42Q96M95 AL158827.2-201ENST00000602494 330 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 AL583856.2-201ENST00000606298 543 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 AC013470.4-201ENST00000619978 986 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 AL691447.3-201ENST00000635020 330 ntBASIC1.32□□□□□ -2.2
CCDC42Q96M95 RNU6-1280P-201ENST00000365211 107 ntBASIC1.31□□□□□ -2.2
CCDC42Q96M95 RNU6-1032P-201ENST00000384100 107 ntBASIC1.31□□□□□ -2.2
CCDC42Q96M95 RNU2-48P-201ENST00000410694 191 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms