Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.6-201ENST00000603753 252 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.11-201ENST00000604059 253 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC104763.2-201ENST00000604179 382 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC008162.1-201ENST00000604718 254 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.1-201ENST00000604752 252 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.5-201ENST00000605253 252 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.12-201ENST00000605291 253 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.8-201ENST00000605353 252 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL670379.7-201ENST00000605823 252 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC107294.1-201ENST00000609524 467 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL603755.1-201ENST00000619504 163 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 MIR6766-201ENST00000622641 72 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AP000770.2-201ENST00000623694 100 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC069528.2-201ENST00000624849 1991 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC080128.1-201ENST00000474389 1917 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 HSPE1P11-201ENST00000339579 310 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 SNORD3E-201ENST00000362899 217 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 RNU4-52P-201ENST00000384209 138 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 SNORD23.1-201ENST00000408212 104 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 HMGN2P38-201ENST00000423806 265 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AL591212.2-201ENST00000433923 257 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC009961.2-201ENST00000435771 251 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 MTND4P25-201ENST00000441039 533 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 MTND1P30-201ENST00000441241 901 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 GPM6BP3-201ENST00000442797 145 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 BRK1P2-201ENST00000442875 223 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 RPS3P1-201ENST00000456781 192 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC022493.1-201ENST00000492984 337 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC234781.5-201ENST00000508429 271 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 Y_RNA.672-201ENST00000516289 104 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 SCARNA24.1-201ENST00000516465 137 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 Y_RNA.689-201ENST00000516589 107 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 MTND3P12-201ENST00000559068 328 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC025678.1-201ENST00000567861 338 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC005771.1-201ENST00000585581 349 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 AL121992.2-201ENST00000606262 256 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC025048.6-202ENST00000627667 438 ntBASIC2□□□□□ -2.09
CCDC54Q8NEL0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2□□□□□ -2.09
CCDC54Q8NEL0 AC131280.1-202ENST00000624067 4211 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 MTND4P27-201ENST00000450813 1354 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RNU1-51P-201ENST00000365345 176 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RNA5SP37-201ENST00000365420 130 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RNU6-166P-201ENST00000384371 107 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 SNORA40C-201ENST00000391285 128 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RPL23AP32-201ENST00000395315 459 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RNU6-248P-201ENST00000410720 107 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AL591704.1-201ENST00000432574 275 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AL109933.2-201ENST00000452651 260 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 MTCO2P6-201ENST00000463134 685 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RNA5SP148-201ENST00000516527 94 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 MIR514B-201ENST00000516774 80 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 SCARNA11.3-201ENST00000517276 130 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 RPL7P20-201ENST00000520308 745 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AC078814.3-201ENST00000553036 491 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AL138976.2-201ENST00000563989 694 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 NRBF2P1-201ENST00000587407 859 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AC005000.2-201ENST00000605468 310 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AL512643.1-201ENST00000635735 524 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 AP000553.5-201ENST00000641933 54 ntBASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
CCDC54Q8NEL0 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 CDC27P3-201ENST00000635418 1910 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 SNORA80A-201ENST00000363922 136 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 SNORA24.1-201ENST00000384401 135 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 MIR558-201ENST00000384920 94 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 RNU6-220P-201ENST00000390919 107 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 U3.26-201ENST00000391236 204 ntBASIC1.98□□□□□ -2.09
CCDC54Q8NEL0 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms