Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RN7SKP267-201ENST00000410381 285 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 RNU2-22P-201ENST00000411266 212 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AC092447.6-201ENST00000414578 210 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AL353748.1-201ENST00000440753 474 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AL121914.1-201ENST00000450188 156 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 RN7SKP21-201ENST00000516503 220 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 RNU6-347P-201ENST00000516658 105 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AC005476.1-201ENST00000554427 397 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AC027228.2-201ENST00000567141 2154 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AL773545.4-201ENST00000637262 310 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AL513478.4-201ENST00000641636 310 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 AC133552.1-201ENST00000569988 4007 ntBASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NPAS3Q8IXF0 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 RNA5SP197-201ENST00000363357 119 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 RNU6-763P-201ENST00000390865 106 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 Y_RNA.584-201ENST00000391090 114 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC007738.1-201ENST00000413892 348 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 RPL7L1P1-201ENST00000448259 785 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC011276.1-201ENST00000469688 323 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 RNU6-709P-201ENST00000517257 104 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC008694.2-201ENST00000517591 306 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC093249.4-201ENST00000564755 259 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 RMST_6.1-201ENST00000611980 203 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AL450472.3-201ENST00000615578 367 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AL136164.4-201ENST00000625013 2135 ntBASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.92□□□□□ -1.62
NPAS3Q8IXF0 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AC009541.1-201ENST00000438279 2662 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 Y_RNA.521-201ENST00000384560 114 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 MIR153-2-201ENST00000385225 87 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AC104333.2-201ENST00000422630 192 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AL031736.2-201ENST00000426573 787 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 RN7SL41P-201ENST00000476144 297 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 RNU6-1315P-201ENST00000517187 99 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 Y_RNA.757-201ENST00000578934 114 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 MIR6716-201ENST00000613413 80 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AC048347.1-201ENST00000624621 427 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 AC068724.3-201ENST00000625906 87 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 A2MP1-204ENST00000566278 4130 ntBASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.91□□□□□ -1.62
NPAS3Q8IXF0 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
NPAS3Q8IXF0 SNORD114-19-201ENST00000363072 75 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 Y_RNA.251-201ENST00000364551 99 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 RNA5SP509-201ENST00000364577 119 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 MIR10B-201ENST00000385011 110 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 MIR329-1-201ENST00000385028 80 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 MIR92A2-201ENST00000385299 75 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 MTHFD2P2-201ENST00000407725 247 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 AC004386.2-201ENST00000441858 148 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 H2AFZP5-201ENST00000446960 382 ntBASIC4.9□□□□□ -1.63
NPAS3Q8IXF0 AC010618.1-201ENST00000469924 477 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms