Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC087276.1-201ENST00000529659 480 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AC018659.1-201ENST00000551083 169 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.16□□□□□ -2.38
LINC00643Q86TS7 SUB1P4-201ENST00000566062 339 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AC091489.2-201ENST00000566263 604 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC0.16□□□□□ -2.38
LINC00643Q86TS7 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 FARSBP1-201ENST00000435808 1778 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 U8.2-201ENST00000363156 134 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 SNORA17.3-201ENST00000391159 129 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 MIR937-201ENST00000401271 86 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 MIR1302-8-201ENST00000408342 128 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 RNU2-33P-201ENST00000410344 192 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 RNU2-48P-201ENST00000410694 191 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 RNA5SP508-201ENST00000411327 119 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 PTGES3P4-201ENST00000426243 356 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 C1DP3-201ENST00000455013 423 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 SNORA70.24-201ENST00000517233 118 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AP001893.2-201ENST00000526949 202 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 PSMA3P-201ENST00000555485 635 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC133485.1-201ENST00000567176 124 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC138907.6-201ENST00000568401 126 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC105129.3-201ENST00000605455 485 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC009509.4-201ENST00000619202 509 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 AC106858.1-201ENST00000637497 429 ntBASIC0.15□□□□□ -2.39
LINC00643Q86TS7 ELL2P3-201ENST00000457883 1602 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 U3.8-201ENST00000363675 217 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 RNU6-945P-201ENST00000383947 107 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 RNU6-348P-201ENST00000384386 107 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AL161935.2-201ENST00000414627 60 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 RPS3AP22-201ENST00000488297 769 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 RPS29P21-201ENST00000496272 170 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 AC022432.1-201ENST00000595739 310 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 RPL30P11-203ENST00000598995 310 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 TUG1_1.1-201ENST00000610654 145 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 VN1R9P-201ENST00000614184 867 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 MTND4P14-201ENST00000435799 1354 ntBASIC0.14□□□□□ -2.39
LINC00643Q86TS7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.14□□□□□ -2.39
LINC00643Q86TS7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 MTND5P35-201ENST00000557537 1720 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 Y_RNA.126-201ENST00000363382 111 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 RNU4-12P-201ENST00000365233 139 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 RNU6-1032P-201ENST00000384100 107 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 RNU6-611P-201ENST00000384276 104 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 VTA1P1-201ENST00000414044 866 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC074344.1-201ENST00000512823 224 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 SNORA70.22-201ENST00000517160 124 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC079598.5-201ENST00000547460 117 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC233266.2-201ENST00000567067 528 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC012213.3-201ENST00000577199 777 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 MIR6134-201ENST00000617606 109 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 MTND1P37-201ENST00000636562 264 ntBASIC0.13□□□□□ -2.39
LINC00643Q86TS7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
LINC00643Q86TS7 AC023934.1-201ENST00000574529 2389 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 AC018630.2-201ENST00000534866 2403 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 RNU2-15P-201ENST00000410692 191 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 USP9YP19-201ENST00000412165 485 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 USP9YP13-201ENST00000417797 480 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 AL353621.1-201ENST00000418219 243 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 SNX2P2-201ENST00000424553 323 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 SKA2P1-201ENST00000425592 390 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC0.12□□□□□ -2.39
LINC00643Q86TS7 UBE2V1P8-201ENST00000437166 265 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 GTF2IP13-201ENST00000438487 386 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 RNU7-95P-201ENST00000459222 64 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 COX6CP14-201ENST00000469580 174 ntBASIC0.12□□□□□ -2.39
LINC00643Q86TS7 SETP6-201ENST00000479329 568 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms