Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GTF2IP20-201ENST00000431663 360 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC108059.3-201ENST00000456388 214 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 MTCYBP16-201ENST00000509187 1129 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 RNA5SP291-201ENST00000517222 105 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC109329.1-201ENST00000518744 317 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC025165.5-201ENST00000602802 578 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AL355297.2-201ENST00000604792 129 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 MED14P1-201ENST00000430517 648 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AC092427.1-201ENST00000439177 601 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AL357134.1-201ENST00000445848 426 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 RPL31P58-201ENST00000469001 379 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 RNU2-44P-201ENST00000516795 194 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-91P-201ENST00000607774 107 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 MIR8084-201ENST00000614105 89 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AC010975.3-201ENST00000618727 978 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 RNU4-38P-201ENST00000364472 129 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 RPL22P22-201ENST00000395439 379 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 MTATP6P27-201ENST00000416987 621 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 MTCYBP32-201ENST00000427945 1084 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AL158053.1-201ENST00000441503 453 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 KATNBL1P6-201ENST00000453433 915 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-1102P-201ENST00000516149 96 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 OR1M4P-201ENST00000589199 287 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AC135507.1-201ENST00000607214 561 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AC092953.2-201ENST00000608000 699 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AP000676.3-201ENST00000623299 569 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 AC073308.1-201ENST00000623696 305 ntBASIC1.39□□□□□ -2.19
CCDC88AQ3V6T2 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 RNU4-42P-201ENST00000364738 142 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-878P-201ENST00000384578 110 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-748P-201ENST00000384648 107 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 RNU2-33P-201ENST00000410344 192 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 VN1R36P-201ENST00000414936 291 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AL590383.1-201ENST00000428602 75 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AC023141.11-201ENST00000508864 202 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AP003497.1-201ENST00000528472 562 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AL133241.1-201ENST00000556832 487 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 CYP3A137P-201ENST00000562436 69 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AC008749.1-201ENST00000597650 306 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AL020996.3-201ENST00000606617 222 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AC010133.1-201ENST00000615809 842 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AC091932.3-201ENST00000624223 323 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 AL138713.1-201ENST00000624026 2130 ntBASIC1.38□□□□□ -2.19
CCDC88AQ3V6T2 RNU1-72P-201ENST00000362976 153 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AL356421.1-201ENST00000403255 413 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 USP9YP18-201ENST00000425912 695 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 RNA5SP290-201ENST00000517133 127 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 SLC2A13P1-201ENST00000531560 322 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AL353997.4-201ENST00000586196 166 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC004987.4-201ENST00000603383 338 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AL589743.7-201ENST00000612637 233 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC109809.1-201ENST00000619665 545 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC084824.4-201ENST00000620106 731 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC120349.2-201ENST00000625002 298 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC008555.8-201ENST00000623602 2168 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-778P-201ENST00000363269 103 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-236P-201ENST00000363886 106 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-560P-201ENST00000364007 108 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-432P-201ENST00000384196 109 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 MIR147B-201ENST00000390185 80 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC079776.3-201ENST00000450665 370 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 RNU5B-3P-201ENST00000516601 115 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 MTCYBP23-201ENST00000558717 1102 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC090888.1-201ENST00000561335 1141 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC069294.1-201ENST00000608397 350 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 AC019226.1-201ENST00000625666 515 ntBASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC88AQ3V6T2 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AL589826.1-201ENST00000340697 249 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms