Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC006927.3-201ENST00000638789 384 ntBASIC2.03□□□□□ -2.08
RFX3P48380 AP000553.5-201ENST00000641933 54 ntBASIC2.03□□□□□ -2.08
RFX3P48380 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
RFX3P48380 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.02□□□□□ -2.09
RFX3P48380 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
RFX3P48380 RNU6-660P-201ENST00000364566 109 ntBASIC2.02□□□□□ -2.09
RFX3P48380 SNORD115.1-201ENST00000391109 76 ntBASIC2.02□□□□□ -2.09
RFX3P48380 USP9YP6-201ENST00000413550 854 ntBASIC2.02□□□□□ -2.09
RFX3P48380 HIGD1AP15-201ENST00000416198 280 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.02□□□□□ -2.09
RFX3P48380 XKRYP1-201ENST00000423438 492 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AL592045.1-201ENST00000429867 352 ntBASIC2.02□□□□□ -2.09
RFX3P48380 XKRYP2-201ENST00000432915 492 ntBASIC2.02□□□□□ -2.09
RFX3P48380 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.02□□□□□ -2.09
RFX3P48380 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.02□□□□□ -2.09
RFX3P48380 UBL5P3-201ENST00000475112 231 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AC109486.1-201ENST00000486833 374 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AC112204.1-201ENST00000502591 103 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AC116347.2-201ENST00000514912 523 ntBASIC2.02□□□□□ -2.09
RFX3P48380 SMURF2P1-201ENST00000514992 481 ntBASIC2.02□□□□□ -2.09
RFX3P48380 RNA5SP112-201ENST00000515937 99 ntBASIC2.02□□□□□ -2.09
RFX3P48380 RNU2-10P-201ENST00000516375 211 ntBASIC2.02□□□□□ -2.09
RFX3P48380 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
RFX3P48380 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
RFX3P48380 AC011979.2-201ENST00000527568 352 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AC174048.1-201ENST00000603389 144 ntBASIC2.02□□□□□ -2.09
RFX3P48380 BNIP3P9-201ENST00000603714 553 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AL358072.1-201ENST00000604156 575 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AC007363.1-201ENST00000604736 620 ntBASIC2.02□□□□□ -2.09
RFX3P48380 AL161423.1-201ENST00000613700 262 ntBASIC2.02□□□□□ -2.09
RFX3P48380 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
RFX3P48380 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.02□□□□□ -2.09
RFX3P48380 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.02□□□□□ -2.09
RFX3P48380 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
RFX3P48380 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
RFX3P48380 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.01□□□□□ -2.09
RFX3P48380 AC092104.1-201ENST00000497346 1441 ntBASIC2.01□□□□□ -2.09
RFX3P48380 MTND5P6-201ENST00000422338 1798 ntBASIC2.01□□□□□ -2.09
RFX3P48380 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.01□□□□□ -2.09
RFX3P48380 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.01□□□□□ -2.09
RFX3P48380 RNU6-500P-201ENST00000362349 107 ntBASIC2.01□□□□□ -2.09
RFX3P48380 RNU6-511P-201ENST00000363496 107 ntBASIC2.01□□□□□ -2.09
RFX3P48380 RNU6-501P-201ENST00000364072 100 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.01□□□□□ -2.09
RFX3P48380 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.01□□□□□ -2.09
RFX3P48380 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.01□□□□□ -2.09
RFX3P48380 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.01□□□□□ -2.09
RFX3P48380 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.01□□□□□ -2.09
RFX3P48380 UBE2D3P1-201ENST00000436669 444 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AL008629.1-201ENST00000438615 184 ntBASIC2.01□□□□□ -2.09
RFX3P48380 RPL22P17-201ENST00000438729 315 ntBASIC2.01□□□□□ -2.09
RFX3P48380 HMGB3P12-201ENST00000438745 556 ntBASIC2.01□□□□□ -2.09
RFX3P48380 IPO7P1-201ENST00000442031 636 ntBASIC2.01□□□□□ -2.09
RFX3P48380 BRK1P2-201ENST00000442875 223 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC124916.1-201ENST00000444020 547 ntBASIC2.01□□□□□ -2.09
RFX3P48380 GDI2P2-201ENST00000445131 608 ntBASIC2.01□□□□□ -2.09
RFX3P48380 MTND1P12-201ENST00000455231 147 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC004263.1-201ENST00000479327 332 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC011005.2-201ENST00000487324 359 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.01□□□□□ -2.09
RFX3P48380 AC008549.1-201ENST00000512900 643 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC009902.1-201ENST00000519351 183 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC123904.2-201ENST00000548059 300 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.01□□□□□ -2.09
RFX3P48380 AL138976.2-201ENST00000563989 694 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AC091489.2-201ENST00000566263 604 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AL138963.2-201ENST00000605137 226 ntBASIC2.01□□□□□ -2.09
RFX3P48380 AL365204.3-201ENST00000612448 685 ntBASIC2.01□□□□□ -2.09
RFX3P48380 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.01□□□□□ -2.09
RFX3P48380 AC009090.3-201ENST00000616553 565 ntBASIC2.01□□□□□ -2.09
RFX3P48380 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
RFX3P48380 TEX21P-201ENST00000447107 1476 ntBASIC2.01□□□□□ -2.09
RFX3P48380 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
RFX3P48380 U8.2-201ENST00000363156 134 ntBASIC2□□□□□ -2.09
RFX3P48380 MIR301A-201ENST00000385261 86 ntBASIC2□□□□□ -2.09
RFX3P48380 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2□□□□□ -2.09
RFX3P48380 MTND4P25-201ENST00000441039 533 ntBASIC2□□□□□ -2.09
RFX3P48380 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2□□□□□ -2.09
RFX3P48380 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2□□□□□ -2.09
RFX3P48380 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2□□□□□ -2.09
RFX3P48380 ANXA2P1-201ENST00000505539 926 ntBASIC2□□□□□ -2.09
RFX3P48380 AKIRIN2P1-201ENST00000505898 352 ntBASIC2□□□□□ -2.09
RFX3P48380 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2□□□□□ -2.09
RFX3P48380 RNU1-41P-201ENST00000516161 162 ntBASIC2□□□□□ -2.09
RFX3P48380 RNU1-48P-201ENST00000516400 162 ntBASIC2□□□□□ -2.09
RFX3P48380 AC022616.6-201ENST00000520479 119 ntBASIC2□□□□□ -2.09
RFX3P48380 MTND4LP18-201ENST00000526864 291 ntBASIC2□□□□□ -2.09
RFX3P48380 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2□□□□□ -2.09
RFX3P48380 AC034229.4-201ENST00000607861 441 ntBASIC2□□□□□ -2.09
RFX3P48380 AL391813.2-201ENST00000609113 322 ntBASIC2□□□□□ -2.09
RFX3P48380 AC108747.1-201ENST00000609508 535 ntBASIC2□□□□□ -2.09
RFX3P48380 AC009831.4-201ENST00000620744 325 ntBASIC2□□□□□ -2.09
RFX3P48380 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2□□□□□ -2.09
RFX3P48380 AC093591.3-201ENST00000634516 308 ntBASIC2□□□□□ -2.09
RFX3P48380 MTND5P42-201ENST00000637720 498 ntBASIC2□□□□□ -2.09
RFX3P48380 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2□□□□□ -2.09
RFX3P48380 Z75746.1-201ENST00000440243 2080 ntBASIC2□□□□□ -2.09
RFX3P48380 AC092881.1-201ENST00000638218 2733 ntBASIC1.99□□□□□ -2.09
RFX3P48380 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
RFX3P48380 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms