Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.54□□□□□ -2
CDX1P47902 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.54□□□□□ -2
CDX1P47902 AC016831.2-201ENST00000417179 352 ntBASIC2.54□□□□□ -2
CDX1P47902 MTCO3P30-201ENST00000426425 670 ntBASIC2.54□□□□□ -2
CDX1P47902 TOMM20P4-201ENST00000427861 435 ntBASIC2.54□□□□□ -2
CDX1P47902 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.54□□□□□ -2
CDX1P47902 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.54□□□□□ -2
CDX1P47902 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.54□□□□□ -2
CDX1P47902 NDUFB1P2-201ENST00000449477 176 ntBASIC2.54□□□□□ -2
CDX1P47902 AL121769.1-201ENST00000469473 401 ntBASIC2.54□□□□□ -2
CDX1P47902 RPL23AP11-201ENST00000475260 469 ntBASIC2.54□□□□□ -2
CDX1P47902 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.54□□□□□ -2
CDX1P47902 HMGB1P29-201ENST00000505659 499 ntBASIC2.54□□□□□ -2
CDX1P47902 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.54□□□□□ -2
CDX1P47902 AC108078.1-201ENST00000508073 725 ntBASIC2.54□□□□□ -2
CDX1P47902 AC105417.1-201ENST00000514691 285 ntBASIC2.54□□□□□ -2
CDX1P47902 RNU6-1178P-201ENST00000516674 107 ntBASIC2.54□□□□□ -2
CDX1P47902 SNORA31.18-201ENST00000517043 134 ntBASIC2.54□□□□□ -2
CDX1P47902 ACA59.2-201ENST00000517061 156 ntBASIC2.54□□□□□ -2
CDX1P47902 RN7SKP57-201ENST00000517248 293 ntBASIC2.54□□□□□ -2
CDX1P47902 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.54□□□□□ -2
CDX1P47902 BTF3P12-201ENST00000519620 469 ntBASIC2.54□□□□□ -2
CDX1P47902 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.54□□□□□ -2
CDX1P47902 AC005476.1-201ENST00000554427 397 ntBASIC2.54□□□□□ -2
CDX1P47902 MIR5004-201ENST00000579078 107 ntBASIC2.54□□□□□ -2
CDX1P47902 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.54□□□□□ -2
CDX1P47902 NDUFA8P1-201ENST00000605525 367 ntBASIC2.54□□□□□ -2
CDX1P47902 AC011890.2-201ENST00000613393 294 ntBASIC2.54□□□□□ -2
CDX1P47902 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.54□□□□□ -2
CDX1P47902 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.54□□□□□ -2
CDX1P47902 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.54□□□□□ -2
CDX1P47902 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.54□□□□□ -2
CDX1P47902 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CDX1P47902 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.54□□□□□ -2
CDX1P47902 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
CDX1P47902 AC009487.2-201ENST00000420969 6821 ntBASIC2.54□□□□□ -2
CDX1P47902 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 SET-203ENST00000372688 801 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 RNU6-259P-201ENST00000383999 107 ntBASIC2.53□□□□□ -2
CDX1P47902 MIR518D-201ENST00000385014 87 ntBASIC2.53□□□□□ -2
CDX1P47902 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 AL591416.1-201ENST00000404015 867 ntBASIC2.53□□□□□ -2
CDX1P47902 U3.37-201ENST00000408528 213 ntBASIC2.53□□□□□ -2
CDX1P47902 RNU2-66P-201ENST00000410650 161 ntBASIC2.53□□□□□ -2
CDX1P47902 RNU4-55P-201ENST00000410731 137 ntBASIC2.53□□□□□ -2
CDX1P47902 RNU4-46P-201ENST00000410818 138 ntBASIC2.53□□□□□ -2
CDX1P47902 AL592148.1-201ENST00000413568 445 ntBASIC2.53□□□□□ -2
CDX1P47902 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.53□□□□□ -2
CDX1P47902 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.53□□□□□ -2
CDX1P47902 Z75741.1-201ENST00000446793 314 ntBASIC2.53□□□□□ -2
CDX1P47902 AL360271.2-201ENST00000447710 161 ntBASIC2.53□□□□□ -2
CDX1P47902 NANOGNBP1-201ENST00000448444 480 ntBASIC2.53□□□□□ -2
CDX1P47902 RPS3AP14-201ENST00000483907 780 ntBASIC2.53□□□□□ -2
CDX1P47902 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 MTCO3P7-201ENST00000510008 774 ntBASIC2.53□□□□□ -2
CDX1P47902 AC104136.1-201ENST00000512969 394 ntBASIC2.53□□□□□ -2
CDX1P47902 AC114781.4-201ENST00000513707 639 ntBASIC2.53□□□□□ -2
CDX1P47902 SNORA31.6-201ENST00000516241 130 ntBASIC2.53□□□□□ -2
CDX1P47902 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.53□□□□□ -2
CDX1P47902 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.53□□□□□ -2
CDX1P47902 OR5BN1P-201ENST00000532955 829 ntBASIC2.53□□□□□ -2
CDX1P47902 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.53□□□□□ -2
CDX1P47902 MIR4703-201ENST00000577728 79 ntBASIC2.53□□□□□ -2
CDX1P47902 MIR3117-201ENST00000584034 78 ntBASIC2.53□□□□□ -2
CDX1P47902 MIR4765-201ENST00000585007 77 ntBASIC2.53□□□□□ -2
CDX1P47902 NRBF2P5-201ENST00000603087 788 ntBASIC2.53□□□□□ -2
CDX1P47902 AC012507.3-201ENST00000603556 477 ntBASIC2.53□□□□□ -2
CDX1P47902 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.53□□□□□ -2
CDX1P47902 MIR8057-201ENST00000620957 69 ntBASIC2.53□□□□□ -2
CDX1P47902 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
CDX1P47902 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
CDX1P47902 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CDX1P47902 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
CDX1P47902 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CDX1P47902 MTND4P14-201ENST00000435799 1354 ntBASIC2.52□□□□□ -2.01
CDX1P47902 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.52□□□□□ -2.01
CDX1P47902 VTRNA1-1-201ENST00000363120 99 ntBASIC2.52□□□□□ -2.01
CDX1P47902 RNU6-461P-201ENST00000364195 107 ntBASIC2.52□□□□□ -2.01
CDX1P47902 RNU4-24P-201ENST00000364565 139 ntBASIC2.52□□□□□ -2.01
CDX1P47902 RNU1-100P-201ENST00000365255 165 ntBASIC2.52□□□□□ -2.01
CDX1P47902 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CDX1P47902 AL139095.1-201ENST00000404326 391 ntBASIC2.52□□□□□ -2.01
CDX1P47902 AL513475.1-201ENST00000406602 315 ntBASIC2.52□□□□□ -2.01
CDX1P47902 RNU2-16P-201ENST00000410712 136 ntBASIC2.52□□□□□ -2.01
CDX1P47902 PGBD4P6-201ENST00000421501 610 ntBASIC2.52□□□□□ -2.01
CDX1P47902 Z98742.2-201ENST00000431564 187 ntBASIC2.52□□□□□ -2.01
CDX1P47902 FABP5P14-201ENST00000437273 393 ntBASIC2.52□□□□□ -2.01
CDX1P47902 CST9LP2-201ENST00000437612 320 ntBASIC2.52□□□□□ -2.01
CDX1P47902 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.52□□□□□ -2.01
CDX1P47902 AC012308.1-201ENST00000451232 178 ntBASIC2.52□□□□□ -2.01
CDX1P47902 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.52□□□□□ -2.01
CDX1P47902 RNU7-63P-201ENST00000459054 62 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms