Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPS29P2-201ENST00000479278 136 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC104806.1-201ENST00000508720 308 ntBASIC3.42□□□□□ -1.86
CIITAP33076 LRRC34P2-201ENST00000514850 553 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC107953.1-201ENST00000522216 297 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.42□□□□□ -1.86
CIITAP33076 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.42□□□□□ -1.86
CIITAP33076 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AL365204.3-201ENST00000612448 685 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC007318.2-201ENST00000620999 243 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC007998.5-201ENST00000622938 237 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC022140.2-201ENST00000623500 188 ntBASIC3.42□□□□□ -1.86
CIITAP33076 AC099654.5-201ENST00000636479 350 ntBASIC3.42□□□□□ -1.86
CIITAP33076 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.42□□□□□ -1.86
CIITAP33076 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.42□□□□□ -1.86
CIITAP33076 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 Y_RNA.61-201ENST00000362835 102 ntBASIC3.41□□□□□ -1.86
CIITAP33076 U3.12-201ENST00000364498 214 ntBASIC3.41□□□□□ -1.86
CIITAP33076 Y_RNA.263-201ENST00000364659 114 ntBASIC3.41□□□□□ -1.86
CIITAP33076 SNORD81.2-201ENST00000365153 76 ntBASIC3.41□□□□□ -1.86
CIITAP33076 RNU6-767P-201ENST00000384132 107 ntBASIC3.41□□□□□ -1.86
CIITAP33076 RNU6-1009P-201ENST00000390996 107 ntBASIC3.41□□□□□ -1.86
CIITAP33076 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 TRIAP1P1-201ENST00000427062 225 ntBASIC3.41□□□□□ -1.86
CIITAP33076 ERLEC1P1-201ENST00000433806 578 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC125238.1-201ENST00000448842 249 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.41□□□□□ -1.86
CIITAP33076 RPL23AP11-201ENST00000475260 469 ntBASIC3.41□□□□□ -1.86
CIITAP33076 GMPSP1-201ENST00000514075 579 ntBASIC3.41□□□□□ -1.86
CIITAP33076 Y_RNA.665-201ENST00000516177 98 ntBASIC3.41□□□□□ -1.86
CIITAP33076 SCARNA15.2-201ENST00000516409 127 ntBASIC3.41□□□□□ -1.86
CIITAP33076 RNU6-840P-201ENST00000517275 65 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CIITAP33076 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.41□□□□□ -1.86
CIITAP33076 HMGB1P14-201ENST00000557424 591 ntBASIC3.41□□□□□ -1.86
CIITAP33076 H3F3AP1-201ENST00000559984 334 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.41□□□□□ -1.86
CIITAP33076 AC011712.1-201ENST00000588959 234 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC012409.4-201ENST00000612923 249 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC130324.3-201ENST00000614165 542 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AL162274.2-201ENST00000614406 332 ntBASIC3.41□□□□□ -1.86
CIITAP33076 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.41□□□□□ -1.86
CIITAP33076 uc_338.11-201ENST00000619132 160 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC005858.4-201ENST00000623191 700 ntBASIC3.41□□□□□ -1.86
CIITAP33076 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.41□□□□□ -1.86
CIITAP33076 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.41□□□□□ -1.86
CIITAP33076 AC103710.2-202ENST00000641454 2853 ntBASIC3.41□□□□□ -1.86
CIITAP33076 AC233263.6-201ENST00000631132 1963 ntBASIC3.4□□□□□ -1.86
CIITAP33076 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.4□□□□□ -1.86
CIITAP33076 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.4□□□□□ -1.86
CIITAP33076 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.4□□□□□ -1.86
CIITAP33076 RNU1-140P-201ENST00000365040 165 ntBASIC3.4□□□□□ -1.87
CIITAP33076 RN7SKP140-201ENST00000411196 284 ntBASIC3.4□□□□□ -1.87
CIITAP33076 MTCO3P46-201ENST00000425787 232 ntBASIC3.4□□□□□ -1.87
CIITAP33076 AC008850.1-201ENST00000427546 362 ntBASIC3.4□□□□□ -1.87
CIITAP33076 NEFMP1-201ENST00000443423 1006 ntBASIC3.4□□□□□ -1.87
CIITAP33076 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.4□□□□□ -1.87
CIITAP33076 RPL21P99-201ENST00000480369 423 ntBASIC3.4□□□□□ -1.87
CIITAP33076 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.4□□□□□ -1.87
CIITAP33076 TTC39CP1-201ENST00000512513 755 ntBASIC3.4□□□□□ -1.87
CIITAP33076 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.4□□□□□ -1.87
CIITAP33076 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.4□□□□□ -1.87
CIITAP33076 RNU6-123P-201ENST00000516163 102 ntBASIC3.4□□□□□ -1.87
CIITAP33076 RNU6-1038P-201ENST00000516516 104 ntBASIC3.4□□□□□ -1.87
CIITAP33076 RNU6-1314P-201ENST00000517139 104 ntBASIC3.4□□□□□ -1.87
CIITAP33076 AC009812.2-201ENST00000517657 457 ntBASIC3.4□□□□□ -1.87
CIITAP33076 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.4□□□□□ -1.87
CIITAP33076 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CIITAP33076 AC009248.2-201ENST00000619826 254 ntBASIC3.4□□□□□ -1.87
CIITAP33076 U6.114-201ENST00000636407 96 ntBASIC3.4□□□□□ -1.87
CIITAP33076 AC022336.2-201ENST00000568966 2538 ntBASIC3.4□□□□□ -1.87
CIITAP33076 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
CIITAP33076 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
CIITAP33076 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.4□□□□□ -1.87
CIITAP33076 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CIITAP33076 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CIITAP33076 MTND4P14-201ENST00000435799 1354 ntBASIC3.39□□□□□ -1.87
CIITAP33076 MTND4P35-201ENST00000604257 1375 ntBASIC3.39□□□□□ -1.87
CIITAP33076 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CIITAP33076 AC073544.1-201ENST00000600110 1595 ntBASIC3.39□□□□□ -1.87
CIITAP33076 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CIITAP33076 Y_RNA.166-201ENST00000363730 102 ntBASIC3.39□□□□□ -1.87
CIITAP33076 RNU4-66P-201ENST00000365199 138 ntBASIC3.39□□□□□ -1.87
CIITAP33076 Y_RNA.378-201ENST00000365652 113 ntBASIC3.39□□□□□ -1.87
CIITAP33076 SNORA44-201ENST00000384584 132 ntBASIC3.39□□□□□ -1.87
CIITAP33076 SNORA46-201ENST00000384762 135 ntBASIC3.39□□□□□ -1.87
CIITAP33076 AL606923.1-201ENST00000406616 190 ntBASIC3.39□□□□□ -1.87
CIITAP33076 RNU6-387P-201ENST00000411331 105 ntBASIC3.39□□□□□ -1.87
CIITAP33076 OR6C66P-201ENST00000414917 930 ntBASIC3.39□□□□□ -1.87
CIITAP33076 AL451054.2-201ENST00000420896 202 ntBASIC3.39□□□□□ -1.87
CIITAP33076 RPL35AP12-201ENST00000425362 338 ntBASIC3.39□□□□□ -1.87
CIITAP33076 AC009237.8-201ENST00000445492 379 ntBASIC3.39□□□□□ -1.87
CIITAP33076 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.39□□□□□ -1.87
CIITAP33076 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.39□□□□□ -1.87
CIITAP33076 SNRPFP3-201ENST00000457792 225 ntBASIC3.39□□□□□ -1.87
CIITAP33076 AC092798.1-201ENST00000458542 409 ntBASIC3.39□□□□□ -1.87
CIITAP33076 RPL21P93-201ENST00000480465 489 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms