Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HOXD3P31249 RNU6-308P-201ENST00000390957 107 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 MIR548P-201ENST00000408336 84 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.95□□□□□ -1.94
HOXD3P31249 RNU2-33P-201ENST00000410344 192 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD3P31249 AC245054.2-201ENST00000415639 319 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 AL035423.1-201ENST00000420331 213 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 Z82205.1-201ENST00000428456 297 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD3P31249 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD3P31249 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD3P31249 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD3P31249 Y_RNA.639-201ENST00000458981 102 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AL135752.1-201ENST00000479477 471 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 RPL7P42-201ENST00000481005 679 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD3P31249 AC079140.5-201ENST00000507882 310 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC104619.4-201ENST00000510773 249 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 Y_RNA.670-201ENST00000516255 105 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 ELOCP31-201ENST00000540463 467 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 MIR5690-201ENST00000583739 73 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD3P31249 AC136601.2-201ENST00000604356 474 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC138627.2-201ENST00000624202 601 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC002546.1-201ENST00000588041 2504 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD3P31249 UBE3AP2-201ENST00000429033 2259 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 AC007823.1-201ENST00000569932 1566 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXD3P31249 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 AC007785.2-201ENST00000598627 1916 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 Y_RNA.128-201ENST00000363391 112 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 Y_RNA.146-201ENST00000363549 102 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 RNU6-1059P-201ENST00000363752 98 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 RNU6-395P-201ENST00000365662 106 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 RNU6-1329P-201ENST00000365664 107 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 MIR483-201ENST00000385070 76 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 RNU6-1197P-201ENST00000391183 107 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 MIR1290-201ENST00000408735 78 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 RNA5SP306-201ENST00000411087 107 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 RNU6-954P-201ENST00000411355 107 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD3P31249 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXD3P31249 AL139247.1-201ENST00000422768 325 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 SSXP4-201ENST00000451349 245 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AL583843.1-201ENST00000456070 346 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD3P31249 Y_RNA.653-201ENST00000459091 95 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXD3P31249 AC116337.1-201ENST00000509680 687 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AC096745.1-201ENST00000509945 370 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXD3P31249 AC026782.1-201ENST00000512952 449 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 MIR892C-201ENST00000516410 77 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 SNORA70.24-201ENST00000517233 118 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXD3P31249 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD3P31249 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD3P31249 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXD3P31249 TRAV28-201ENST00000557548 323 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD3P31249 SNRPGP17-201ENST00000603780 214 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AP000654.2-201ENST00000605633 586 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 AC096577.2-201ENST00000611455 153 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AL136164.4-201ENST00000625013 2135 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD3P31249 AL669831.3-213ENST00000636676 183 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 MTND4P27-201ENST00000450813 1354 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 KPNA2P1-201ENST00000458289 1591 ntBASIC2.94□□□□□ -1.94
HOXD3P31249 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD3P31249 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD3P31249 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD3P31249 MTND5P19-201ENST00000424872 1794 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-37P-201ENST00000362692 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-11P-201ENST00000364234 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-7-201ENST00000364784 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-8-201ENST00000365467 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-25P-201ENST00000383873 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-741P-201ENST00000383889 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-1-201ENST00000383898 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-48P-201ENST00000384161 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-36P-201ENST00000384172 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-4P-201ENST00000384205 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-5P-201ENST00000384238 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-3P-201ENST00000384314 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-16P-201ENST00000384385 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-15P-201ENST00000384534 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-2-201ENST00000384627 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-29P-201ENST00000384637 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-9-201ENST00000384776 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-33P-201ENST00000384793 107 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms