Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.39□□□□□ -1.71
COL8A1P27658 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.39□□□□□ -1.71
COL8A1P27658 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 MAPK10-328ENST00000641553 4009 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RNU1-136P-201ENST00000384181 164 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 SNORA36C-201ENST00000384289 132 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RNU6-768P-201ENST00000384683 107 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 Y_RNA.558-201ENST00000384685 113 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RPEP3-201ENST00000425462 676 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RN7SL189P-201ENST00000468631 289 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 RNU6-155P-201ENST00000516347 100 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RNU6-58P-201ENST00000517143 103 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RNU2-60P-201ENST00000517290 128 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.39□□□□□ -1.71
COL8A1P27658 ZNF192P1-203ENST00000565888 810 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 RN7SL690P-201ENST00000582087 240 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 AC123786.2-201ENST00000603459 275 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 AL138963.2-201ENST00000605137 226 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL8A1P27658 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 AC100757.1-201ENST00000616872 1835 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 AC116096.1-201ENST00000566804 2314 ntBASIC4.39□□□□□ -1.71
COL8A1P27658 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 AC134026.1-201ENST00000623249 2239 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.38□□□□□ -1.71
COL8A1P27658 SNORA70.4-201ENST00000365509 134 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.38□□□□□ -1.71
COL8A1P27658 MIR616-201ENST00000385293 97 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 RNU6-588P-201ENST00000410281 105 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 GPS2P1-201ENST00000411761 986 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 AL121914.1-201ENST00000450188 156 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 IGHV5-78-201ENST00000450948 295 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 RNU6-1007P-201ENST00000516586 107 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 CYCSP23-201ENST00000519781 313 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 AC005868.1-201ENST00000536421 331 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.38□□□□□ -1.71
COL8A1P27658 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.38□□□□□ -1.71
COL8A1P27658 AC013791.1-201ENST00000616619 62 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 ZYXP1-201ENST00000617638 118 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 AC015726.2-201ENST00000620112 122 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 AL353748.2-201ENST00000622148 471 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 CR381572.2-201ENST00000624852 397 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.38□□□□□ -1.71
COL8A1P27658 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.38□□□□□ -1.71
COL8A1P27658 ZNF702P-202ENST00000434269 1966 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 SMG1P4-204ENST00000523028 4131 ntBASIC4.38□□□□□ -1.71
COL8A1P27658 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL8A1P27658 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.38□□□□□ -1.71
COL8A1P27658 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL8A1P27658 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL8A1P27658 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.37□□□□□ -1.71
COL8A1P27658 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL8A1P27658 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL8A1P27658 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL8A1P27658 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL8A1P27658 AC069528.2-201ENST00000624849 1991 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.37□□□□□ -1.71
COL8A1P27658 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL8A1P27658 RNU6-78P-201ENST00000362897 107 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 RNY1P11-201ENST00000363759 113 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 SNORD115-8-201ENST00000363856 82 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 RNU6-105P-201ENST00000363909 104 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 RNA5SP387-201ENST00000364226 106 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 Y_RNA.294-201ENST00000364916 102 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 SNORD115-38-201ENST00000365037 82 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 Y_RNA.393-201ENST00000383936 102 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 SNORA70F-201ENST00000384142 135 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 SNORA29-201ENST00000384183 140 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 SNORD56.6-201ENST00000384569 71 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 MIR548A3-201ENST00000385297 97 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 SNORA11.2-201ENST00000408318 127 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 BX323845.1-201ENST00000432417 179 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 AL353748.1-201ENST00000440753 474 ntBASIC4.37□□□□□ -1.71
COL8A1P27658 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms