Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MTATP6P13-201ENST00000438531 667 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC073614.1-201ENST00000438690 650 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 RPS15AP7-201ENST00000439294 405 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXC4P09017 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXC4P09017 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXC4P09017 AC034222.1-201ENST00000494052 532 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 RPS27P27-201ENST00000498779 255 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXC4P09017 TTC39CP1-201ENST00000512513 755 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXC4P09017 RNU6-718P-201ENST00000516166 105 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 RNU6-201P-201ENST00000517100 61 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 RNU1-104P-201ENST00000517280 175 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 MTCO2P4-201ENST00000517968 247 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC107934.1-201ENST00000522215 217 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC134698.4-201ENST00000523451 826 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXC4P09017 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXC4P09017 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXC4P09017 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXC4P09017 AC105137.2-201ENST00000569073 466 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 MYL12BP1-201ENST00000569826 507 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 MIR1273D-201ENST00000577266 86 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 MIR4801-201ENST00000582704 82 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXC4P09017 AL158211.4-201ENST00000606988 584 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC092954.2-201ENST00000609103 430 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC108479.2-201ENST00000617314 601 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC136475.10-201ENST00000620253 385 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AC091953.2-201ENST00000623979 160 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 PISRT1-201ENST00000626175 531 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXC4P09017 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXC4P09017 OR4G2P-202ENST00000641004 1759 ntBASIC2.3□□□□□ -2.04
HOXC4P09017 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXC4P09017 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXC4P09017 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HOXC4P09017 OR4G2P-201ENST00000328113 903 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RNU4-1-201ENST00000363925 141 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 SNORA67.1-201ENST00000364749 141 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RNU6-282P-201ENST00000365357 103 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 MIR627-201ENST00000384979 97 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RNU6-780P-201ENST00000391030 104 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 CALM2P3-201ENST00000400429 449 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC099548.1-201ENST00000421443 426 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC007283.2-201ENST00000424739 197 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AL049734.2-201ENST00000441066 616 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RPS3AP17-201ENST00000472594 777 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
HOXC4P09017 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC135721.1-201ENST00000497954 479 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC108078.1-201ENST00000508073 725 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC107222.1-201ENST00000510899 637 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 Y_RNA.672-201ENST00000516289 104 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RNU6-314P-201ENST00000516574 104 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 RNU6-1220P-201ENST00000517126 108 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 IGLV3-17-201ENST00000519099 244 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC026464.5-201ENST00000562497 722 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC136619.2-201ENST00000563361 631 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC068135.2-201ENST00000569293 1028 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXC4P09017 AC060771.1-201ENST00000582031 164 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 OR10AB1P-201ENST00000609613 938 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AL161734.1-201ENST00000609720 557 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC103710.1-201ENST00000610003 901 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AC109347.2-201ENST00000610220 349 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 AL158209.2-201ENST00000619266 216 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 UCA1.1-201ENST00000620952 75 ntBASIC2.29□□□□□ -2.04
HOXC4P09017 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HOXC4P09017 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC4P09017 FARSBP1-201ENST00000435808 1778 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC4P09017 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC4P09017 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
HOXC4P09017 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC4P09017 MIR21-201ENST00000362134 72 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RNU5E-1-201ENST00000362477 120 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RNY4P16-201ENST00000364768 94 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RNU6-359P-201ENST00000365466 108 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 Y_RNA.372-201ENST00000365599 102 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RNU6-741P-201ENST00000383889 107 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXC4P09017 AL591416.1-201ENST00000404015 867 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 EIF1P1-201ENST00000421436 341 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 OOSP1P1-201ENST00000423265 274 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AL353777.1-201ENST00000425552 326 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms