Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 RPL38P4-201ENST00000502376 214 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 SNORA31.8-201ENST00000516327 108 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-875P-201ENST00000516488 106 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-1038P-201ENST00000516516 104 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AL365204.3-201ENST00000612448 685 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AC012409.4-201ENST00000612923 249 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AC063943.3-201ENST00000615562 356 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AP003122.6-201ENST00000623831 495 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AC090617.10-201ENST00000624308 134 ntBASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
SMARCAL1Q9NZC9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 DEFB108F-201ENST00000344638 222 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-38P-201ENST00000384085 107 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-550P-201ENST00000391057 101 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AL162578.1-201ENST00000406202 378 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-1077P-201ENST00000410506 102 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 Y_RNA.615-201ENST00000410769 117 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-193P-201ENST00000410977 107 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-373P-201ENST00000411247 98 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC091390.3-201ENST00000426478 338 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 CBWD4P-201ENST00000445695 655 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 SNRPFP3-201ENST00000457792 225 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-333P-201ENST00000459117 107 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU7-180P-201ENST00000459240 63 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RPS23P3-201ENST00000470993 430 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC117440.1-201ENST00000474107 571 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RPL21P99-201ENST00000480369 423 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RN7SL504P-201ENST00000494496 287 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 MTCO3P9-201ENST00000506989 781 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC098591.2-201ENST00000510152 315 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC010486.1-201ENST00000511793 424 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC046134.1-201ENST00000514454 666 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 LRRC34P2-201ENST00000514850 553 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC018638.8-201ENST00000588755 281 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC104763.2-201ENST00000604179 382 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AL670379.4-201ENST00000605279 254 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 RNU6-89P-201ENST00000606519 100 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 AC069234.5-201ENST00000611056 416 ntBASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.09□□□□□ -1.91
SMARCAL1Q9NZC9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.09□□□□□ -1.92
SMARCAL1Q9NZC9 MTND4P35-201ENST00000604257 1375 ntBASIC3.09□□□□□ -1.92
SMARCAL1Q9NZC9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SMARCAL1Q9NZC9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.09□□□□□ -1.92
SMARCAL1Q9NZC9 FAM35CP-201ENST00000554755 2470 ntBASIC3.09□□□□□ -1.92
SMARCAL1Q9NZC9 MTND5P7-201ENST00000413558 1798 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 CBX3P1-201ENST00000325243 554 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 RNU1-35P-201ENST00000362782 153 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 Y_RNA.157-201ENST00000363638 102 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 SNORD46.1-201ENST00000364139 104 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 Y_RNA.231-201ENST00000364358 102 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 RNU6-1148P-201ENST00000410992 104 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 RNA5SP111-201ENST00000411386 101 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 OR6C66P-201ENST00000414917 930 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AL513185.2-201ENST00000425543 193 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 SRIP2-201ENST00000428470 166 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 SNORA31.3-201ENST00000516029 96 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 RANP3-201ENST00000530970 276 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 ADI1P3-201ENST00000549509 470 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AC078814.3-201ENST00000553036 491 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AL118558.2-201ENST00000556294 238 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 MIR4424-201ENST00000585257 86 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 UBE2V2P2-201ENST00000587677 504 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AC011712.1-201ENST00000588959 234 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 TPTE2P4-201ENST00000258589 1605 ntBASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.08□□□□□ -1.92
SMARCAL1Q9NZC9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
SMARCAL1Q9NZC9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SMARCAL1Q9NZC9 AL137003.2-201ENST00000606924 2538 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms