Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
DDX56Q9NY93 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.78□□□□□ -1.8
DDX56Q9NY93 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 Y_RNA.530-201ENST00000384587 101 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RNU6-1106P-201ENST00000390845 107 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 U3.39-201ENST00000408569 239 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RN7SKP156-201ENST00000410308 342 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RAB28P1-201ENST00000411517 641 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL353678.1-201ENST00000422735 741 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL159987.2-201ENST00000432754 307 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 MTATP6P23-201ENST00000440153 476 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL353572.1-201ENST00000442490 417 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 MTCO2P3-201ENST00000442543 421 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 RNU7-138P-201ENST00000459479 64 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RN7SL385P-201ENST00000468873 276 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RPL27AP5-201ENST00000469428 449 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RPL31P41-201ENST00000477967 372 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 TRBVA-201ENST00000498804 316 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC098799.2-201ENST00000509466 868 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RNU5F-8P-201ENST00000515941 111 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 RNU2-27P-201ENST00000516185 142 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC023050.3-201ENST00000541142 333 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 RN7SL703P-201ENST00000578485 302 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC020895.1-201ENST00000595362 272 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC005261.5-201ENST00000596280 355 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC024153.1-201ENST00000603103 365 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 RNVU1-4-201ENST00000612985 164 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC011890.2-201ENST00000613393 294 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
DDX56Q9NY93 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.77□□□□□ -1.81
DDX56Q9NY93 AC099654.14-201ENST00000638599 341 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
DDX56Q9NY93 PWAR6-201ENST00000552334 4618 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 AL079305.1-201ENST00000623159 3008 ntBASIC3.77□□□□□ -1.81
DDX56Q9NY93 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
DDX56Q9NY93 CASC19-280ENST00000642102 1351 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.76□□□□□ -1.81
DDX56Q9NY93 RNU6-522P-201ENST00000364497 107 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 MIR1289-1-201ENST00000408836 144 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 Y_RNA.615-201ENST00000410769 117 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.76□□□□□ -1.81
DDX56Q9NY93 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.76□□□□□ -1.81
DDX56Q9NY93 MTCO3P18-201ENST00000440206 761 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 MRPL42P6-201ENST00000486397 371 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 HMGN1P11-201ENST00000508668 303 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.76□□□□□ -1.81
DDX56Q9NY93 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC009163.5-201ENST00000575421 637 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC060780.3-201ENST00000589464 80 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AL670379.10-201ENST00000604330 253 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AL670379.9-201ENST00000605428 253 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC093913.1-201ENST00000614178 329 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC006504.8-201ENST00000621046 635 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC002064.3-201ENST00000623448 346 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 MIR3529-201ENST00000637713 78 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 AC073073.2-201ENST00000609827 2578 ntBASIC3.76□□□□□ -1.81
DDX56Q9NY93 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
DDX56Q9NY93 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
DDX56Q9NY93 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
DDX56Q9NY93 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.75□□□□□ -1.81
DDX56Q9NY93 AC138393.1-203ENST00000327086 343 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-37P-201ENST00000362692 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 Y_RNA.88-201ENST00000363029 99 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 SNORD113-7-201ENST00000363762 77 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-11P-201ENST00000364234 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-7-201ENST00000364784 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-8-201ENST00000365467 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-25P-201ENST00000383873 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-1-201ENST00000383898 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-48P-201ENST00000384161 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-36P-201ENST00000384172 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-4P-201ENST00000384205 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-5P-201ENST00000384238 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNY3P14-201ENST00000384309 102 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-3P-201ENST00000384314 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-16P-201ENST00000384385 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-15P-201ENST00000384534 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-2-201ENST00000384627 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-29P-201ENST00000384637 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-9-201ENST00000384776 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-33P-201ENST00000384793 107 ntBASIC3.75□□□□□ -1.81
DDX56Q9NY93 RNU6-876P-201ENST00000391295 104 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 158.9 ms