Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 DPPA3P1-201ENST00000448050 469 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC003071.1-201ENST00000451219 789 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 NIPA2P5-201ENST00000452282 464 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC073901.1-201ENST00000462471 408 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 RNU5F-8P-201ENST00000515941 111 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 SCARNA17.1-201ENST00000516211 143 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 SCARNA17.2-201ENST00000516334 143 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 RNU6-572P-201ENST00000516724 80 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AP002453.2-201ENST00000533503 320 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC006199.1-201ENST00000548728 219 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 ADI1P3-201ENST00000549509 470 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AL157871.3-201ENST00000557231 293 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 MIR4782-201ENST00000577987 79 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 MIR3605-201ENST00000583214 100 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC005261.5-201ENST00000596280 355 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 SEPT7P9-203ENST00000604116 343 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AL139286.2-201ENST00000606838 396 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AL589743.7-201ENST00000612637 233 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 SCARNA17.4-201ENST00000614296 143 ntBASIC2.49□□□□□ -2.01
DDX28Q9NUL7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.49□□□□□ -2.01
DDX28Q9NUL7 AC103710.2-202ENST00000641454 2853 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AL139276.1-201ENST00000311910 1001 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 MIR26A1-201ENST00000362205 77 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 SNORA24.1-201ENST00000384401 135 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 RNU6-1025P-201ENST00000410629 104 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 RNU6-248P-201ENST00000410720 107 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AL161651.1-201ENST00000440882 223 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC108078.2-201ENST00000510750 236 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC091965.2-201ENST00000512324 613 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 RNU6-1220P-201ENST00000517126 108 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 COX6CP5-201ENST00000527162 228 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 HPRT1P3-201ENST00000539521 576 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 LINC00933-203ENST00000559812 219 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 CYCSP39-201ENST00000565821 309 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 MIR4658-201ENST00000584344 65 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 AC073544.2-201ENST00000601155 540 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.48□□□□□ -2.01
DDX28Q9NUL7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
DDX28Q9NUL7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC092593.1-201ENST00000515413 1815 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 Y_RNA.33-201ENST00000362591 102 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 RNU6-395P-201ENST00000365662 106 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 RNU6-301P-201ENST00000384277 107 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 SNORA40C-201ENST00000391285 128 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 RNU6-195P-201ENST00000411352 109 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 MTND3P17-201ENST00000416968 344 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 RPS20P5-201ENST00000434808 360 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL353706.1-201ENST00000436728 494 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC003982.1-202ENST00000469928 248 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC126389.1-201ENST00000477436 290 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC090096.1-201ENST00000489168 390 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 SCGB1D5P-201ENST00000515134 247 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 SCARNA24.1-201ENST00000516465 137 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 SNORA18.6-201ENST00000516792 115 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 SNORA31.19-201ENST00000517079 126 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC090572.1-201ENST00000519251 160 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 MTND2P38-201ENST00000522536 667 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AP003072.2-201ENST00000527756 676 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL121821.2-201ENST00000556081 394 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 GTF3AP2-201ENST00000557014 266 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 MYL12BP1-201ENST00000569826 507 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms