Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 AL137843.1-201ENST00000605078 385 ntBASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 AC124864.2-201ENST00000624736 186 ntBASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.34□□□□□ -1.87
HERPUD2Q9BSE4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HERPUD2Q9BSE4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 RNA5SP383-201ENST00000362934 120 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 SNORD14B-201ENST00000364533 90 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-715P-201ENST00000365204 103 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 U3.37-201ENST00000408528 213 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AL592148.1-201ENST00000413568 445 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC016831.2-201ENST00000417179 352 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 RPS3AP12-201ENST00000443616 753 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 snoU109.2-201ENST00000459316 135 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 RPS27P29-201ENST00000463110 252 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 RPL37P25-201ENST00000507308 276 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC074344.1-201ENST00000512823 224 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 LRRC34P2-201ENST00000514850 553 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 MIR892C-201ENST00000516410 77 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 RN7SKP219-201ENST00000516825 296 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 OR5AQ1P-201ENST00000527596 927 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC078795.2-201ENST00000602835 1252 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC019159.1-201ENST00000605094 187 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 AC017083.3-201ENST00000609955 700 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.33□□□□□ -1.88
HERPUD2Q9BSE4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-1180P-201ENST00000364935 107 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 Y_RNA.481-201ENST00000384373 102 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 MTCO3P40-201ENST00000392516 676 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AL353621.1-201ENST00000418219 243 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AL353193.1-201ENST00000421444 268 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 MTCYBP8-201ENST00000422855 651 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC005326.1-201ENST00000429197 123 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC104332.2-201ENST00000429959 156 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 RPL23AP83-201ENST00000434984 473 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 RPS12P18-201ENST00000442381 270 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 UBBP3-201ENST00000445497 241 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 PSPHP1-201ENST00000450062 261 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC012308.1-201ENST00000451232 178 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 RPL23AP70-201ENST00000483361 460 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 MTAPP1-201ENST00000489154 819 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 MTND3P25-201ENST00000509243 135 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC114781.4-201ENST00000513707 639 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 RNA5SP217-201ENST00000515959 91 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 ACA59.2-201ENST00000517061 156 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 MIR5195-201ENST00000583555 115 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC122108.2-201ENST00000611946 526 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AC098679.4-201ENST00000624241 654 ntBASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.32□□□□□ -1.88
HERPUD2Q9BSE4 AL021368.2-201ENST00000606125 5352 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 MTND4P5-201ENST00000435821 1374 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-858P-201ENST00000362436 107 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 RNU1-100P-201ENST00000365255 165 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 Y_RNA.409-201ENST00000383990 98 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-748P-201ENST00000384648 107 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 MIR627-201ENST00000384979 97 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-1158P-201ENST00000391167 107 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 RNA5SP120-201ENST00000410900 112 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 PGBD4P6-201ENST00000421501 610 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AL606489.2-201ENST00000433886 234 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 DNAJC19P4-201ENST00000440115 345 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms