Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC006566.1-201ENST00000608943 513 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC010678.1-201ENST00000614118 713 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC093648.1-201ENST00000623546 606 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AL137790.1-201ENST00000634283 177 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA1Q96BD8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA1Q96BD8 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AL109809.4-201ENST00000603520 2185 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SKA1Q96BD8 SNORA5B-201ENST00000363786 132 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 SNORA44-201ENST00000384584 132 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 MIR518D-201ENST00000385014 87 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 MIR34A-201ENST00000385130 110 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 MIR1302-8-201ENST00000408342 128 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AL365338.1-201ENST00000422282 858 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC104389.3-201ENST00000445629 235 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 NDUFB1P2-201ENST00000449477 176 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 MTCYBP1-201ENST00000454315 1119 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 AP001324.2-201ENST00000461163 319 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 AP004217.1-201ENST00000480579 346 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC096576.1-201ENST00000489014 359 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 MTND4P2-201ENST00000507767 1203 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 MTCO3P28-201ENST00000513351 515 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC112206.3-201ENST00000514578 389 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 RNU6-685P-201ENST00000517088 95 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 SCARNA3-201ENST00000517097 143 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 OR5AQ1P-201ENST00000527596 927 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 OR5AL2P-201ENST00000532185 920 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 MIR5692A1-201ENST00000580523 69 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 uc_338.25-201ENST00000613756 156 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AC022079.1-201ENST00000621546 602 ntBASIC3.12□□□□□ -1.91
SKA1Q96BD8 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
SKA1Q96BD8 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SKA1Q96BD8 AL390237.1-201ENST00000404226 1415 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC093536.2-201ENST00000565257 1406 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SKA1Q96BD8 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SKA1Q96BD8 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SKA1Q96BD8 RNU6-486P-201ENST00000363116 107 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 SNORA80A-201ENST00000363922 136 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 RNU1-100P-201ENST00000365255 165 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 SNORA75B-201ENST00000384053 137 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 MTCYBP5-201ENST00000423752 1135 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 Z98742.2-201ENST00000431564 187 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC107083.1-201ENST00000439643 279 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 RPS15AP9-201ENST00000439856 381 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 USP9YP29-201ENST00000445112 563 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SKA1Q96BD8 RPL31P3-201ENST00000458430 332 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 UBE2DNL-203ENST00000474922 222 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC104806.1-201ENST00000508720 308 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC008885.1-201ENST00000514930 301 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC009812.2-201ENST00000517657 457 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC107016.2-201ENST00000547968 190 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC092325.1-201ENST00000566449 554 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 UBL5P2-201ENST00000583788 219 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AL138889.2-201ENST00000603883 242 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AL021997.1-201ENST00000605757 193 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 AC092656.1-203ENST00000624134 423 ntBASIC3.11□□□□□ -1.91
SKA1Q96BD8 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA1Q96BD8 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SKA1Q96BD8 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SKA1Q96BD8 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
SKA1Q96BD8 SNORD115-7-201ENST00000365306 82 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 RNU6-456P-201ENST00000384493 107 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 RNU6-1179P-201ENST00000384667 107 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 Y_RNA.576-201ENST00000384781 102 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 MIR218-1-201ENST00000384999 110 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 MIR454-201ENST00000390180 115 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.1□□□□□ -1.91
SKA1Q96BD8 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.1□□□□□ -1.91
SKA1Q96BD8 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.1□□□□□ -1.91
SKA1Q96BD8 AC104058.1-201ENST00000448028 297 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 RPL21P41-201ENST00000459863 264 ntBASIC3.1□□□□□ -1.91
SKA1Q96BD8 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms