Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC007785.2-201ENST00000598627 1916 ntBASIC4.72□□□□□ -1.65
USP48Q86UV5 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP48Q86UV5 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
USP48Q86UV5 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
USP48Q86UV5 AC018529.3-201ENST00000624212 2254 ntBASIC4.71□□□□□ -1.65
USP48Q86UV5 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
USP48Q86UV5 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP48Q86UV5 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP48Q86UV5 RNA5SP322-201ENST00000363617 119 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP48Q86UV5 RNU6-95P-201ENST00000384697 107 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 MIR568-201ENST00000385036 95 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP48Q86UV5 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
USP48Q86UV5 CYCSP33-201ENST00000414485 327 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.71□□□□□ -1.66
USP48Q86UV5 HMGB1P9-201ENST00000429856 646 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 FTH1P6-201ENST00000430768 320 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.71□□□□□ -1.66
USP48Q86UV5 BX510359.1-201ENST00000456973 237 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 RPL30P15-201ENST00000457129 321 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 AL133162.1-201ENST00000463228 453 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 MTCYBP40-201ENST00000509390 1135 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 MIR892C-201ENST00000516410 77 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 RNA5SP468-201ENST00000516782 93 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 OR5D17P-201ENST00000531492 978 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 SNRPGP18-201ENST00000553000 214 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 GNRHR2P1-201ENST00000555315 631 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.71□□□□□ -1.66
USP48Q86UV5 AL713922.2-201ENST00000619384 716 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
USP48Q86UV5 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.71□□□□□ -1.66
USP48Q86UV5 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP48Q86UV5 AL359693.1-201ENST00000614959 2407 ntBASIC4.71□□□□□ -1.66
USP48Q86UV5 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.7□□□□□ -1.66
USP48Q86UV5 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.7□□□□□ -1.66
USP48Q86UV5 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 MTND5P10-201ENST00000603719 1809 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 MIR412-201ENST00000362142 91 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 Y_RNA.28-201ENST00000362554 111 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 Y_RNA.324-201ENST00000365165 102 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 AL356057.3-201ENST00000402607 340 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 Y_RNA.605-201ENST00000410577 105 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 RNU6-293P-201ENST00000411259 106 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.7□□□□□ -1.66
USP48Q86UV5 RPS15AP6-201ENST00000420703 385 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 RPL31P12-201ENST00000422587 358 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 AL591419.1-201ENST00000427423 339 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 MTCO3P10-201ENST00000455912 772 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 ELOCP24-201ENST00000456370 334 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.7□□□□□ -1.66
USP48Q86UV5 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.7□□□□□ -1.66
USP48Q86UV5 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 MIR3690-201ENST00000580266 75 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 AC244505.7-201ENST00000599675 272 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.7□□□□□ -1.66
USP48Q86UV5 AC007938.3-201ENST00000604965 623 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USP48Q86UV5 KPNA2P1-201ENST00000458289 1591 ntBASIC4.7□□□□□ -1.66
USP48Q86UV5 SNORD62.1-201ENST00000362541 86 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 SNORD3E-201ENST00000362899 217 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 RNU6-639P-201ENST00000384074 107 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 U1.1-201ENST00000384101 164 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AL645568.3-201ENST00000433683 316 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.69□□□□□ -1.66
USP48Q86UV5 Z82210.1-201ENST00000440037 231 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.69□□□□□ -1.66
USP48Q86UV5 MTND5P22-201ENST00000458380 195 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AC011005.2-201ENST00000487324 359 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AC092436.3-201ENST00000511788 257 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 PTP4A1P4-201ENST00000512479 322 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 RNU1-86P-201ENST00000516108 154 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 RNU2-58P-201ENST00000516403 183 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 RNU1-107P-201ENST00000516617 154 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.69□□□□□ -1.66
USP48Q86UV5 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.69□□□□□ -1.66
USP48Q86UV5 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.69□□□□□ -1.66
USP48Q86UV5 OR1M4P-201ENST00000589199 287 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 PISRT1.1-201ENST00000616930 107 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AC138305.3-201ENST00000624988 240 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 MIR3651-201ENST00000630427 90 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 AL669831.3-213ENST00000636676 183 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.69□□□□□ -1.66
USP48Q86UV5 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.69□□□□□ -1.66
USP48Q86UV5 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP48Q86UV5 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP48Q86UV5 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
USP48Q86UV5 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.69□□□□□ -1.66
USP48Q86UV5 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP48Q86UV5 AC010733.2-201ENST00000589496 5702 ntBASIC4.69□□□□□ -1.66
USP48Q86UV5 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.68□□□□□ -1.66
USP48Q86UV5 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP48Q86UV5 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.68□□□□□ -1.66
USP48Q86UV5 RNA5SP399-201ENST00000364003 117 ntBASIC4.68□□□□□ -1.66
USP48Q86UV5 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms