Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 HMGN3P1-201ENST00000453847 193 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC015724.1-201ENST00000478577 156 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 RPL36AP48-201ENST00000485521 314 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC008837.1-201ENST00000511513 412 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL512310.8-201ENST00000550183 120 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 NACAP3-201ENST00000552100 481 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 LSM6P2-201ENST00000552208 177 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 MIR3973-201ENST00000579824 107 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AL671309.1-201ENST00000603750 544 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.2□□□□□ -2.38
LINC00643Q86TS7 AC017037.3-201ENST00000625016 472 ntBASIC0.2□□□□□ -2.38
LINC00643Q86TS7 RNA5SP361-201ENST00000362686 118 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 RNU6-76P-201ENST00000384060 104 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 RNU6-110P-201ENST00000384508 104 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 MIR670-201ENST00000390142 98 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC013267.1-201ENST00000458227 267 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 RPL26P26-201ENST00000480251 434 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC093767.1-201ENST00000504523 156 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC017037.2-201ENST00000513850 890 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC022483.1-201ENST00000514020 567 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 RNU4-57P-201ENST00000515980 135 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 MIR3944-201ENST00000581277 108 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AC136601.2-201ENST00000604356 474 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 AL031176.1-201ENST00000604554 466 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 MIR6516-201ENST00000630554 81 ntBASIC0.19□□□□□ -2.38
LINC00643Q86TS7 MTCO1P9-201ENST00000505577 1534 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 RNU4-51P-201ENST00000364206 140 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 RNU4-74P-201ENST00000411280 161 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 RPS3AP1-201ENST00000413190 320 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 MTCO3P5-201ENST00000433620 714 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 OR2AQ1P-201ENST00000451972 200 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 RFC5P1-201ENST00000454419 874 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 RN7SKP88-201ENST00000516847 250 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AC006518.2-201ENST00000542513 940 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.18□□□□□ -2.38
LINC00643Q86TS7 NDUFA8P1-201ENST00000605525 367 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AF129408.1-201ENST00000608767 431 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AC096772.1-201ENST00000609146 564 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 Z82243.1-201ENST00000609432 473 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 7SK.8-201ENST00000612110 250 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 7SK.11-201ENST00000615477 250 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 AL109620.1-201ENST00000618738 1197 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 7SK.13-201ENST00000622040 250 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 IGHVIII-44-202ENST00000636235 289 ntBASIC0.18□□□□□ -2.38
LINC00643Q86TS7 MTND5P11-201ENST00000511037 1812 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
LINC00643Q86TS7 RNU4-82P-201ENST00000362443 140 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 SNORA50A-201ENST00000384225 134 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 ATP5F1P6-201ENST00000402768 767 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 RNU2-47P-201ENST00000410649 186 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AP1B1P2-201ENST00000416196 106 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 CYCSP49-201ENST00000420810 319 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC010099.3-201ENST00000423896 409 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AL035407.1-201ENST00000429211 571 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AL353706.1-201ENST00000436728 494 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 RPL23AP35-201ENST00000451906 501 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 SNORD124-201ENST00000459577 104 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 FAM133DP-201ENST00000464802 691 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 ARL2BPP4-201ENST00000506854 471 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 PTP4A1P4-201ENST00000512479 322 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 RNA5SP134-201ENST00000516492 96 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC100821.1-201ENST00000523153 2479 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 CR383656.7-201ENST00000548164 174 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC0.17□□□□□ -2.38
LINC00643Q86TS7 ROCK1P1-201ENST00000573767 549 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 MIR5093-201ENST00000583199 100 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC090970.3-201ENST00000612566 866 ntBASIC0.17□□□□□ -2.38
LINC00643Q86TS7 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.17□□□□□ -2.38
LINC00643Q86TS7 AC127391.1-201ENST00000411737 98 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 RPP40P1-201ENST00000426762 456 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AL365400.1-201ENST00000431854 640 ntBASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.16□□□□□ -2.38
LINC00643Q86TS7 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms