Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 U8.3-201ENST00000363321 132 ntBASIC0.9□□□□□ -2.27
ABCA4P78363 SNORD26-201ENST00000384147 75 ntBASIC0.9□□□□□ -2.27
ABCA4P78363 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 AL353691.1-201ENST00000451332 387 ntBASIC0.9□□□□□ -2.27
ABCA4P78363 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC0.9□□□□□ -2.27
ABCA4P78363 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC0.9□□□□□ -2.27
ABCA4P78363 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.9□□□□□ -2.27
ABCA4P78363 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC0.9□□□□□ -2.27
ABCA4P78363 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.9□□□□□ -2.27
ABCA4P78363 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.9□□□□□ -2.27
ABCA4P78363 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC0.9□□□□□ -2.27
ABCA4P78363 AC004067.1-201ENST00000608733 700 ntBASIC0.9□□□□□ -2.27
ABCA4P78363 AL138478.1-201ENST00000612252 832 ntBASIC0.9□□□□□ -2.27
ABCA4P78363 AC008443.7-201ENST00000622195 246 ntBASIC0.9□□□□□ -2.27
ABCA4P78363 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
ABCA4P78363 RNU6-252P-201ENST00000363232 107 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 RNU6-884P-201ENST00000363889 107 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 MIR532-201ENST00000385025 91 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 MIR29C-201ENST00000385231 88 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 CCDC58P2-201ENST00000417131 366 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC0.89□□□□□ -2.27
ABCA4P78363 AC004941.2-201ENST00000427009 228 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.89□□□□□ -2.27
ABCA4P78363 HMGN2P10-201ENST00000448085 265 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 RNU6-362P-201ENST00000516736 90 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.89□□□□□ -2.27
ABCA4P78363 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.89□□□□□ -2.27
ABCA4P78363 AL391813.1-201ENST00000603098 260 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 AC112191.3-201ENST00000604371 277 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 U6.101-201ENST00000637707 76 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.89□□□□□ -2.27
ABCA4P78363 RNU1-62P-201ENST00000362599 164 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 RNU6-35P-201ENST00000384530 107 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 SNORA8-201ENST00000384574 139 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 MIR888-201ENST00000401186 77 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 MIR1302-8-201ENST00000408342 128 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 SDAD1P3-201ENST00000427380 333 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.89□□□□□ -2.27
ABCA4P78363 AL512844.2-201ENST00000433990 593 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 RNA5SP436-201ENST00000516020 115 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 RNA5SP384-201ENST00000516615 116 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 BNIP3P24-201ENST00000593398 557 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 BNIP3P25-201ENST00000596023 559 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 FRG1HP-204ENST00000617940 757 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 AC090617.9-201ENST00000623751 147 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.89□□□□□ -2.27
ABCA4P78363 MIR4275-201ENST00000636486 87 ntBASIC0.89□□□□□ -2.27
ABCA4P78363 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC0.88□□□□□ -2.27
ABCA4P78363 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
ABCA4P78363 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
ABCA4P78363 Y_RNA.60-201ENST00000362831 98 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.88□□□□□ -2.27
ABCA4P78363 NDUFS5P4-201ENST00000412983 318 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 KATNBL1P6-201ENST00000453433 915 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.88□□□□□ -2.27
ABCA4P78363 RNU6-970P-201ENST00000516312 107 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 RNA5SP395-201ENST00000516567 118 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 RNA5SP291-201ENST00000517222 105 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 CBX3P7-201ENST00000532876 502 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 AC009268.1-201ENST00000561352 1203 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 AC093510.2-201ENST00000562820 896 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.88□□□□□ -2.27
ABCA4P78363 AC016925.2-201ENST00000605108 242 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 AL121652.1-201ENST00000608851 448 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 AP000776.1-201ENST00000530032 1663 ntBASIC0.88□□□□□ -2.27
ABCA4P78363 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.87□□□□□ -2.27
ABCA4P78363 RNU1-78P-201ENST00000391248 165 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 MTCO2P31-201ENST00000402702 684 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0.87□□□□□ -2.27
ABCA4P78363 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.87□□□□□ -2.27
ABCA4P78363 AL354941.1-201ENST00000438600 464 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 AC092170.1-201ENST00000440211 356 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.87□□□□□ -2.27
ABCA4P78363 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.87□□□□□ -2.27
ABCA4P78363 IGJP1-201ENST00000522682 475 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.87□□□□□ -2.27
ABCA4P78363 AC002545.1-201ENST00000592511 181 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.87□□□□□ -2.27
ABCA4P78363 RNU6-878P-201ENST00000384578 110 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 RNU6-750P-201ENST00000390946 107 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 PTGES3P2-201ENST00000407942 482 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 RNU2-28P-201ENST00000410457 189 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.87□□□□□ -2.27
ABCA4P78363 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.87□□□□□ -2.27
ABCA4P78363 RPL31P35-201ENST00000431058 377 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC0.87□□□□□ -2.27
ABCA4P78363 RSU1P2-202ENST00000437884 485 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 DDX3P2-201ENST00000446138 111 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 MRPS17P3-201ENST00000465453 385 ntBASIC0.87□□□□□ -2.27
ABCA4P78363 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms