Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX1P28360 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
MSX1P28360 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX1P28360 AC010332.2-201ENST00000613083 1904 ntBASIC4.66□□□□□ -1.66
MSX1P28360 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
MSX1P28360 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
MSX1P28360 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
MSX1P28360 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX1P28360 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
MSX1P28360 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 Y_RNA.182-201ENST00000363880 111 ntBASIC4.66□□□□□ -1.66
MSX1P28360 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 SNORA2.3-201ENST00000383920 135 ntBASIC4.66□□□□□ -1.66
MSX1P28360 RNU6-629P-201ENST00000384061 103 ntBASIC4.66□□□□□ -1.66
MSX1P28360 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 AL078599.1-201ENST00000402075 293 ntBASIC4.66□□□□□ -1.66
MSX1P28360 CTSL3P-202ENST00000412179 788 ntBASIC4.66□□□□□ -1.66
MSX1P28360 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.66□□□□□ -1.66
MSX1P28360 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX1P28360 MED28P6-201ENST00000558776 231 ntBASIC4.66□□□□□ -1.66
MSX1P28360 ZNF192P1-203ENST00000565888 810 ntBASIC4.66□□□□□ -1.66
MSX1P28360 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.66□□□□□ -1.66
MSX1P28360 AL356157.2-201ENST00000605122 111 ntBASIC4.66□□□□□ -1.66
MSX1P28360 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX1P28360 AC048347.1-201ENST00000624621 427 ntBASIC4.66□□□□□ -1.66
MSX1P28360 AC092593.1-201ENST00000515413 1815 ntBASIC4.66□□□□□ -1.66
MSX1P28360 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.66□□□□□ -1.66
MSX1P28360 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX1P28360 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSX1P28360 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
MSX1P28360 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSX1P28360 AC110491.1-201ENST00000562191 2010 ntBASIC4.65□□□□□ -1.66
MSX1P28360 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
MSX1P28360 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSX1P28360 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
MSX1P28360 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
MSX1P28360 FTLP6-201ENST00000355274 422 ntBASIC4.65□□□□□ -1.67
MSX1P28360 Y_RNA.127-201ENST00000363386 109 ntBASIC4.65□□□□□ -1.67
MSX1P28360 SNORD115-8-201ENST00000363856 82 ntBASIC4.65□□□□□ -1.67
MSX1P28360 RNU6-153P-201ENST00000364422 104 ntBASIC4.65□□□□□ -1.67
MSX1P28360 SNORD32A-201ENST00000364805 84 ntBASIC4.65□□□□□ -1.67
MSX1P28360 SNORD115-38-201ENST00000365037 82 ntBASIC4.65□□□□□ -1.67
MSX1P28360 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSX1P28360 AL035079.1-201ENST00000405210 287 ntBASIC4.65□□□□□ -1.67
MSX1P28360 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX1P28360 AC245028.1-201ENST00000423259 256 ntBASIC4.65□□□□□ -1.67
MSX1P28360 RPL27AP8-201ENST00000424277 446 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AL358075.3-201ENST00000426289 226 ntBASIC4.65□□□□□ -1.67
MSX1P28360 RPL23AP95-201ENST00000426806 265 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AL512844.2-201ENST00000433990 593 ntBASIC4.65□□□□□ -1.67
MSX1P28360 RPL7AP61-201ENST00000443410 636 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AL354714.3-201ENST00000447284 493 ntBASIC4.65□□□□□ -1.67
MSX1P28360 snoU13.20-201ENST00000459180 104 ntBASIC4.65□□□□□ -1.67
MSX1P28360 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.65□□□□□ -1.67
MSX1P28360 RN7SL244P-201ENST00000493405 297 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AC020593.1-201ENST00000507399 299 ntBASIC4.65□□□□□ -1.67
MSX1P28360 SNORA31.20-201ENST00000517111 133 ntBASIC4.65□□□□□ -1.67
MSX1P28360 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.65□□□□□ -1.67
MSX1P28360 AC011487.3-201ENST00000593607 453 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AL008718.3-201ENST00000610217 321 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AL357075.2-201ENST00000614906 189 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AC024581.2-201ENST00000619986 252 ntBASIC4.65□□□□□ -1.67
MSX1P28360 SNORA43.4-201ENST00000629559 138 ntBASIC4.65□□□□□ -1.67
MSX1P28360 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.65□□□□□ -1.67
MSX1P28360 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
MSX1P28360 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX1P28360 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSX1P28360 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
MSX1P28360 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSX1P28360 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.65□□□□□ -1.67
MSX1P28360 AC090971.4-201ENST00000560291 1800 ntBASIC4.65□□□□□ -1.67
MSX1P28360 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
MSX1P28360 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.64□□□□□ -1.67
MSX1P28360 MAPK10-349ENST00000641767 3661 ntBASIC4.64□□□□□ -1.67
MSX1P28360 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.64□□□□□ -1.67
MSX1P28360 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 RNU6-1272P-201ENST00000362776 107 ntBASIC4.64□□□□□ -1.67
MSX1P28360 SNORA72.2-201ENST00000365028 127 ntBASIC4.64□□□□□ -1.67
MSX1P28360 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 RNA5SP87-201ENST00000384155 118 ntBASIC4.64□□□□□ -1.67
MSX1P28360 MIR487A-201ENST00000385009 80 ntBASIC4.64□□□□□ -1.67
MSX1P28360 RNU6-239P-201ENST00000390990 99 ntBASIC4.64□□□□□ -1.67
MSX1P28360 Y_RNA.595-201ENST00000410403 105 ntBASIC4.64□□□□□ -1.67
MSX1P28360 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.64□□□□□ -1.67
MSX1P28360 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 UBE2CP3-201ENST00000502715 450 ntBASIC4.64□□□□□ -1.67
MSX1P28360 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.64□□□□□ -1.67
MSX1P28360 AC233702.2-202ENST00000562547 291 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms