Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.42□□□□□ -1.7
COL8A1P27658 RPS27AP12-201ENST00000429552 465 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.42□□□□□ -1.7
COL8A1P27658 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.42□□□□□ -1.7
COL8A1P27658 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.42□□□□□ -1.7
COL8A1P27658 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.42□□□□□ -1.7
COL8A1P27658 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.42□□□□□ -1.7
COL8A1P27658 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.42□□□□□ -1.7
COL8A1P27658 AC020593.1-201ENST00000507399 299 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.42□□□□□ -1.7
COL8A1P27658 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.42□□□□□ -1.7
COL8A1P27658 A2MP1-204ENST00000566278 4130 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.42□□□□□ -1.7
COL8A1P27658 MIR6716-201ENST00000613413 80 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 MIR6133-201ENST00000617057 108 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 MIR6853-201ENST00000619642 74 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL8A1P27658 AC138965.3-201ENST00000623875 498 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL8A1P27658 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL8A1P27658 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
COL8A1P27658 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.42□□□□□ -1.7
COL8A1P27658 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL8A1P27658 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL8A1P27658 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL8A1P27658 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 AC092681.1-201ENST00000297369 291 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 Y_RNA.35-201ENST00000362601 101 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 Y_RNA.101-201ENST00000363154 102 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 RNU6-1167P-201ENST00000363227 94 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 RNU6-643P-201ENST00000384018 107 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 U8.19-201ENST00000459095 133 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 CYCSP29-201ENST00000533731 318 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 AC122688.1-201ENST00000541494 223 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 Y_RNA.757-201ENST00000578934 114 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 AL357075.2-201ENST00000614906 189 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 AC011944.2-201ENST00000624440 683 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 OR4F13P-202ENST00000560066 2054 ntBASIC4.41□□□□□ -1.7
COL8A1P27658 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL8A1P27658 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.41□□□□□ -1.7
COL8A1P27658 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.4□□□□□ -1.7
COL8A1P27658 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL8A1P27658 AP001642.1-201ENST00000624727 2117 ntBASIC4.4□□□□□ -1.7
COL8A1P27658 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL8A1P27658 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
COL8A1P27658 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
COL8A1P27658 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.4□□□□□ -1.7
COL8A1P27658 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL8A1P27658 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.4□□□□□ -1.7
COL8A1P27658 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
COL8A1P27658 RNA5SP28-201ENST00000363841 119 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL8A1P27658 U8.10-201ENST00000384260 133 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 SNORA8.3-201ENST00000384679 139 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 MIR670-201ENST00000390142 98 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL8A1P27658 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 RNA5SP56-201ENST00000410277 118 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 RNA5SP296-201ENST00000410523 111 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 RNU6-1199P-201ENST00000411249 104 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 HSPE1P13-201ENST00000451143 297 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 BX276092.4-201ENST00000452056 248 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.4□□□□□ -1.71
COL8A1P27658 RPL23AP24-201ENST00000458203 385 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 RNU6-1198P-201ENST00000516904 67 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 AL161798.1-201ENST00000604630 131 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL8A1P27658 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL8A1P27658 AC106754.2-201ENST00000623006 233 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL8A1P27658 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
COL8A1P27658 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
COL8A1P27658 AP000756.2-201ENST00000624168 2567 ntBASIC4.4□□□□□ -1.71
COL8A1P27658 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL8A1P27658 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
COL8A1P27658 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL8A1P27658 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
COL8A1P27658 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
COL8A1P27658 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.39□□□□□ -1.71
COL8A1P27658 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.39□□□□□ -1.71
COL8A1P27658 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms