Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.24□□□□□ -1.73
COL6A1P12109 AC026784.1-201ENST00000507986 352 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 AC017037.1-201ENST00000508460 471 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 Y_RNA.661-201ENST00000516003 99 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 RNU6-1069P-201ENST00000516612 133 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 ERHP1-201ENST00000523006 310 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.24□□□□□ -1.73
COL6A1P12109 MTCO3P23-201ENST00000561363 289 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 MIR5692C1-201ENST00000585309 91 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 BNIP3P16-201ENST00000589779 534 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.24□□□□□ -1.73
COL6A1P12109 FAM157A-202ENST00000615155 405 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 AL359547.2-201ENST00000615810 418 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 U4.1-201ENST00000620349 87 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 MIR8057-201ENST00000620957 69 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A1P12109 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.24□□□□□ -1.73
COL6A1P12109 AC002546.1-201ENST00000588041 2504 ntBASIC4.24□□□□□ -1.73
COL6A1P12109 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.23□□□□□ -1.73
COL6A1P12109 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL6A1P12109 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.23□□□□□ -1.73
COL6A1P12109 MIR448-201ENST00000362131 111 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 RNA5SP50-201ENST00000363731 107 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 RNU6-190P-201ENST00000384154 102 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 MIR568-201ENST00000385036 95 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL6A1P12109 SNORA16.2-201ENST00000390991 127 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 RNU6-882P-201ENST00000391025 103 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.23□□□□□ -1.73
COL6A1P12109 AL591704.1-201ENST00000432574 275 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AC073063.1-201ENST00000434352 607 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.23□□□□□ -1.73
COL6A1P12109 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.23□□□□□ -1.73
COL6A1P12109 AL049830.2-201ENST00000480072 201 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 RNU6-390P-201ENST00000516259 103 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 MED28P6-201ENST00000558776 231 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AC090425.1-201ENST00000610007 140 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AL110115.1-201ENST00000614396 364 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 AC002076.2-201ENST00000617362 122 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.23□□□□□ -1.73
COL6A1P12109 MIR6852-201ENST00000621699 66 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 Z69720.2-201ENST00000624755 279 ntBASIC4.23□□□□□ -1.73
COL6A1P12109 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
COL6A1P12109 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
COL6A1P12109 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A1P12109 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL6A1P12109 AC058791.1-201ENST00000608412 3198 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 RNU6-715P-201ENST00000365204 103 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 Y_RNA.463-201ENST00000384271 102 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 RNU6-907P-201ENST00000390924 102 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 SNORA75.6-201ENST00000391318 127 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 RNA5SP39-201ENST00000411245 120 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 RPL21P109-201ENST00000422213 475 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 AC005326.1-201ENST00000429197 123 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
COL6A1P12109 AL731563.1-201ENST00000442202 214 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 GAPDHP27-201ENST00000447427 1020 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.22□□□□□ -1.73
COL6A1P12109 AC026801.1-201ENST00000497178 464 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 RNU6-1332P-201ENST00000516666 104 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 RNU6-323P-201ENST00000521915 107 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC022695.1-201ENST00000522089 237 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 CYCSP27-201ENST00000527643 293 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AP002404.1-201ENST00000532005 451 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.22□□□□□ -1.73
COL6A1P12109 AC069240.1-201ENST00000548774 375 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.22□□□□□ -1.73
COL6A1P12109 CYP4A43P-201ENST00000568156 121 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 MTND6P33-201ENST00000571794 183 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 MIR4474-201ENST00000579189 78 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC008962.1-201ENST00000605729 304 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC009229.3-201ENST00000608056 282 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC006157.1-201ENST00000611750 366 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC068831.7-201ENST00000616954 363 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 MIR7154-201ENST00000620673 73 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 AC092608.2-201ENST00000624427 218 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 MIR4275-201ENST00000636486 87 ntBASIC4.22□□□□□ -1.73
COL6A1P12109 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
COL6A1P12109 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL6A1P12109 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms