Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA3O43365 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 AC107871.2-201ENST00000612894 502 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 MIR6891-201ENST00000618788 93 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA3O43365 U4.7-201ENST00000638126 106 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 MIR492-201ENST00000638676 116 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA3O43365 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA3O43365 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA3O43365 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA3O43365 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
HOXA3O43365 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 AL672167.1-203ENST00000641299 2975 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 DHX9P1-201ENST00000436565 3076 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 FTLP6-201ENST00000355274 422 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HOXA3O43365 RNU1-20P-201ENST00000363314 162 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 U3.6-201ENST00000363622 211 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNA5SP167-201ENST00000365461 116 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 SNORA63.7-201ENST00000365579 123 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 RNU1-63P-201ENST00000383902 164 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNA5SP31-201ENST00000411144 127 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC004552.1-201ENST00000419089 348 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA3O43365 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA3O43365 AL132765.1-201ENST00000434165 553 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 AL356535.1-201ENST00000440335 398 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC073910.1-201ENST00000445047 438 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 PCNPP5-201ENST00000452246 481 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AL645939.1-201ENST00000453429 797 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA3O43365 RPS26P3-201ENST00000470205 348 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC090543.2-201ENST00000483963 348 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC004057.1-201ENST00000485827 348 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RN7SL283P-201ENST00000489055 303 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RPL30P5-201ENST00000494923 336 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC017037.1-201ENST00000508460 471 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC008958.1-201ENST00000511047 682 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNA5SP49-201ENST00000516450 115 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNU6-1282P-201ENST00000516735 96 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNU6-703P-201ENST00000516946 107 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA3O43365 MIR4782-201ENST00000577987 79 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 MTND4LP5-201ENST00000605152 292 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC006023.2-201ENST00000609916 167 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 FTX_3.1-201ENST00000610451 147 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 MIR8059-201ENST00000620427 81 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC091905.2-201ENST00000623143 306 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 AC027309.3-201ENST00000623419 351 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 RNA5SP196-201ENST00000625967 102 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA3O43365 AL592182.3-201ENST00000642132 3304 ntBASIC3.49□□□□□ -1.85
HOXA3O43365 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA3O43365 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA3O43365 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA3O43365 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HOXA3O43365 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA3O43365 RNU6-50P-201ENST00000362356 103 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 SNORA31-201ENST00000362607 130 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RNU1-83P-201ENST00000363426 164 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RNA5SP175-201ENST00000364275 119 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RNU6-336P-201ENST00000364891 107 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RNU6-72P-201ENST00000384285 79 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 Y_RNA.551-201ENST00000384661 102 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RPL21P1-201ENST00000399532 476 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RPS29P13-201ENST00000402041 169 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RNA5SP129-201ENST00000410276 118 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RN7SKP177-201ENST00000410567 355 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RNA5SP494-201ENST00000410653 129 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 AL512844.2-201ENST00000433990 593 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA3O43365 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA3O43365 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA3O43365 RPS29P27-201ENST00000463711 170 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
HOXA3O43365 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA3O43365 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms