Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU6-1050P-201ENST00000410388 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.96□□□□□ -1.78
CBX4O00257 Z99755.1-201ENST00000414048 380 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 RAC1P3-201ENST00000416129 580 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 AC091286.1-201ENST00000431233 461 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RPL23AP83-201ENST00000434984 473 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 AC018437.1-201ENST00000492214 406 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 MIR4782-201ENST00000577987 79 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AP000654.2-201ENST00000605633 586 ntBASIC3.96□□□□□ -1.78
CBX4O00257 SNORA51-201ENST00000606420 132 ntBASIC3.96□□□□□ -1.78
CBX4O00257 RNU6-6P-201ENST00000606623 107 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AC004825.2-201ENST00000616634 455 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AC012314.7-201ENST00000619693 93 ntBASIC3.96□□□□□ -1.78
CBX4O00257 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.96□□□□□ -1.78
CBX4O00257 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
CBX4O00257 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.96□□□□□ -1.78
CBX4O00257 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CBX4O00257 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CBX4O00257 AC010733.2-201ENST00000589496 5702 ntBASIC3.96□□□□□ -1.78
CBX4O00257 AC106871.1-201ENST00000568324 3102 ntBASIC3.95□□□□□ -1.78
CBX4O00257 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CBX4O00257 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CBX4O00257 Y_RNA.445-201ENST00000384168 102 ntBASIC3.95□□□□□ -1.78
CBX4O00257 RNU6-310P-201ENST00000384655 107 ntBASIC3.95□□□□□ -1.78
CBX4O00257 RN7SKP156-201ENST00000410308 342 ntBASIC3.95□□□□□ -1.78
CBX4O00257 HMGN2P30-201ENST00000423237 256 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AC097713.2-201ENST00000430199 356 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.95□□□□□ -1.78
CBX4O00257 AC236972.1-201ENST00000433225 199 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AL031274.1-201ENST00000450334 232 ntBASIC3.95□□□□□ -1.78
CBX4O00257 HMGB3P22-202ENST00000451823 572 ntBASIC3.95□□□□□ -1.78
CBX4O00257 PRSS3P4-201ENST00000453323 162 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.95□□□□□ -1.78
CBX4O00257 RNU7-187P-201ENST00000458985 68 ntBASIC3.95□□□□□ -1.78
CBX4O00257 RNA5SP310-201ENST00000459084 116 ntBASIC3.95□□□□□ -1.78
CBX4O00257 Y_RNA.631-201ENST00000459607 101 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AC026782.1-201ENST00000512952 449 ntBASIC3.95□□□□□ -1.78
CBX4O00257 RNU6-1213P-201ENST00000517075 94 ntBASIC3.95□□□□□ -1.78
CBX4O00257 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.95□□□□□ -1.78
CBX4O00257 AC022695.1-201ENST00000522089 237 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.95□□□□□ -1.78
CBX4O00257 AC008121.1-201ENST00000603244 268 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AL160281.1-201ENST00000605307 311 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AC009229.3-201ENST00000608056 282 ntBASIC3.95□□□□□ -1.78
CBX4O00257 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.95□□□□□ -1.78
CBX4O00257 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.95□□□□□ -1.78
CBX4O00257 AC091953.5-201ENST00000622919 233 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AC244517.12-201ENST00000623581 663 ntBASIC3.95□□□□□ -1.78
CBX4O00257 Z69720.2-201ENST00000624755 279 ntBASIC3.95□□□□□ -1.78
CBX4O00257 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.95□□□□□ -1.78
CBX4O00257 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
CBX4O00257 AF117829.1-206ENST00000621883 3802 ntBASIC3.95□□□□□ -1.78
CBX4O00257 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.95□□□□□ -1.78
CBX4O00257 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
CBX4O00257 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
CBX4O00257 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CBX4O00257 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CBX4O00257 MTND5P19-201ENST00000424872 1794 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AL133383.2-201ENST00000622958 2336 ntBASIC3.94□□□□□ -1.78
CBX4O00257 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.94□□□□□ -1.78
CBX4O00257 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 Y_RNA.197-201ENST00000364004 102 ntBASIC3.94□□□□□ -1.78
CBX4O00257 U8.11-201ENST00000384699 133 ntBASIC3.94□□□□□ -1.78
CBX4O00257 U8.12-201ENST00000384701 133 ntBASIC3.94□□□□□ -1.78
CBX4O00257 MIR517A-201ENST00000385001 87 ntBASIC3.94□□□□□ -1.78
CBX4O00257 MIR559-201ENST00000385188 96 ntBASIC3.94□□□□□ -1.78
CBX4O00257 RPL5P18-201ENST00000406671 891 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AL591034.1-201ENST00000407447 340 ntBASIC3.94□□□□□ -1.78
CBX4O00257 SNORA3.3-201ENST00000408712 125 ntBASIC3.94□□□□□ -1.78
CBX4O00257 Y_RNA.594-201ENST00000410373 140 ntBASIC3.94□□□□□ -1.78
CBX4O00257 Y_RNA.646-201ENST00000410980 101 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CBX4O00257 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.94□□□□□ -1.78
CBX4O00257 RPL37P4-201ENST00000448908 268 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.94□□□□□ -1.78
CBX4O00257 PCMTD1P1-201ENST00000455560 355 ntBASIC3.94□□□□□ -1.78
CBX4O00257 MTCO3P10-201ENST00000455912 772 ntBASIC3.94□□□□□ -1.78
CBX4O00257 U8.18-201ENST00000459285 133 ntBASIC3.94□□□□□ -1.78
CBX4O00257 RPS26P15-201ENST00000488067 348 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AC097473.1-201ENST00000508142 408 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CBX4O00257 AC020661.2-201ENST00000560114 134 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.94□□□□□ -1.78
CBX4O00257 MIR3171-201ENST00000584270 74 ntBASIC3.94□□□□□ -1.78
CBX4O00257 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.94□□□□□ -1.78
CBX4O00257 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.94□□□□□ -1.78
CBX4O00257 AC009093.8-201ENST00000641769 292 ntBASIC3.94□□□□□ -1.78
CBX4O00257 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms