Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 RNA5SP388-201ENST00000362584 119 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 RNU6-886P-201ENST00000384319 105 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 RNU6-937P-201ENST00000384325 106 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 RNA5SP187-201ENST00000384400 119 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 MIR659-201ENST00000384963 97 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 TMSB10P2-201ENST00000416049 131 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 SNRPEP9-201ENST00000436794 238 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 RPL35AP21-201ENST00000437667 333 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 AL136097.1-201ENST00000456945 913 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 PARP4P3-201ENST00000510265 317 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 MRPS36P4-201ENST00000534436 298 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 AC136601.2-201ENST00000604356 474 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 AC011476.5-201ENST00000615594 130 ntBASIC5.06□□□□□ -1.6
NOD1Q9Y239 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
NOD1Q9Y239 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NOD1Q9Y239 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.06□□□□□ -1.6
NOD1Q9Y239 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 AL136964.1-201ENST00000622038 2990 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NOD1Q9Y239 RNU1-94P-201ENST00000362627 173 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 RNU6-1301P-201ENST00000362724 104 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 RNA5SP28-201ENST00000363841 119 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 RNU6-105P-201ENST00000363909 104 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 RNU1-64P-201ENST00000365443 163 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 AC007738.1-201ENST00000413892 348 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 AL445305.1-201ENST00000432577 575 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 RN7SL98P-201ENST00000462271 300 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 RPS26P21-201ENST00000475397 348 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 AC105137.1-201ENST00000484355 562 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NOD1Q9Y239 RPL23AP53-201ENST00000521854 457 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 AC005868.1-201ENST00000536421 331 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 MIR4782-201ENST00000577987 79 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 AC010928.2-201ENST00000588017 287 ntBASIC5.05□□□□□ -1.6
NOD1Q9Y239 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
NOD1Q9Y239 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NOD1Q9Y239 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 AC007785.2-201ENST00000598627 1916 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 RNU6-222P-201ENST00000362438 107 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 Y_RNA.83-201ENST00000363005 113 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 RNU6-527P-201ENST00000363425 104 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 Y_RNA.793-201ENST00000411222 111 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 RPL23AP26-201ENST00000412728 464 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 AC009237.8-201ENST00000445492 379 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 AL392103.1-201ENST00000447000 198 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 UQCRHP4-201ENST00000471686 272 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 AC026784.1-201ENST00000507986 352 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 SERF1AP1-201ENST00000514575 187 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 CYCSP29-201ENST00000533731 318 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 UBE2Q2P6-201ENST00000612666 153 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 AL445567.2-201ENST00000618935 498 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 AC008568.2-201ENST00000623862 2313 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NOD1Q9Y239 SALL4P2-201ENST00000423288 2910 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NOD1Q9Y239 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.04□□□□□ -1.6
NOD1Q9Y239 AL445487.1-201ENST00000415694 1580 ntBASIC5.04□□□□□ -1.6
NOD1Q9Y239 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
NOD1Q9Y239 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NOD1Q9Y239 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NOD1Q9Y239 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
NOD1Q9Y239 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NOD1Q9Y239 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NOD1Q9Y239 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
NOD1Q9Y239 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
NOD1Q9Y239 RNU6-774P-201ENST00000363238 107 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 RNU6-968P-201ENST00000384076 107 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 RNU6-102P-201ENST00000384485 104 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.03□□□□□ -1.6
NOD1Q9Y239 Z82210.1-201ENST00000440037 231 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 AC009296.1-201ENST00000443146 155 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.03□□□□□ -1.6
NOD1Q9Y239 RPL23AP75-201ENST00000491601 451 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 RPL23AP49-201ENST00000492925 468 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 RNU6-496P-201ENST00000516145 99 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 MIR4643-201ENST00000577473 78 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.03□□□□□ -1.6
NOD1Q9Y239 U2.14-201ENST00000615943 113 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 SCARNA4-201ENST00000629045 128 ntBASIC5.03□□□□□ -1.6
NOD1Q9Y239 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms