Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 SCARNA14-201ENST00000516903 136 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 RNU6-1271P-201ENST00000517049 105 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 SNORD58B-201ENST00000607313 66 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AL021879.1-201ENST00000611756 288 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 BMS1P21-201ENST00000634565 365 ntBASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC87Q9NVE4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 Y_RNA.314-201ENST00000365114 102 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 RHOT1P2-201ENST00000366423 333 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 U1.1-201ENST00000384101 164 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 NUP35P1-201ENST00000422734 947 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 BX276092.3-201ENST00000424182 230 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 AL160314.1-201ENST00000490836 438 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 RNU1-86P-201ENST00000516108 154 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 SNORA40.14-201ENST00000516543 86 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 RNU1-107P-201ENST00000516617 154 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 RNU7-4P-201ENST00000516961 62 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 IGKV2D-23-201ENST00000518179 286 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 AC084851.1-201ENST00000529105 249 ntBASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
CCDC87Q9NVE4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 AL138885.1-201ENST00000405921 675 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 RNU6-325P-201ENST00000411132 105 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 NDUFB4P7-201ENST00000423198 363 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 MRPS18CP6-201ENST00000423587 223 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 AL158071.1-201ENST00000430315 461 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 NDUFB1P2-201ENST00000449477 176 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 AL353752.1-201ENST00000454946 260 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 AC022447.4-201ENST00000504053 364 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 HMGN1P11-201ENST00000508668 303 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 AC113155.1-201ENST00000511141 769 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 CPDP1-201ENST00000579660 283 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 SNRPGP15-201ENST00000600149 222 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC87Q9NVE4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 RNU1-15P-201ENST00000353977 144 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 RNU6-238P-201ENST00000363313 106 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 SNORD14.1-201ENST00000365609 90 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 RNU6-1181P-201ENST00000384191 106 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 RNU6-1025P-201ENST00000410629 104 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AL031274.1-201ENST00000450334 232 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 RPS24P6-201ENST00000452670 400 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AC010285.1-201ENST00000470580 392 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 RN7SL293P-201ENST00000481765 281 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 UBE2CP3-201ENST00000502715 450 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AC093852.1-201ENST00000503587 266 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 TRAV32-201ENST00000553993 340 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AP002826.1-201ENST00000608835 315 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 MIR7975-201ENST00000619350 68 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 LINC01109-201ENST00000603837 3081 ntBASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC87Q9NVE4 AC008669.1-201ENST00000565823 2178 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AL136964.1-201ENST00000622038 2990 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 RNU6-1222P-201ENST00000384615 107 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 RNVU1-14-201ENST00000384770 164 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms