Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 HMGB1P14-201ENST00000557424 591 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 RNU4-78P-201ENST00000410940 126 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC004383.1-201ENST00000438135 289 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AL034418.1-201ENST00000448675 860 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 RPS26P45-201ENST00000471748 340 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC055731.1-201ENST00000474387 401 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC074198.2-201ENST00000508153 258 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 MIR8065-201ENST00000620577 100 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC130454.1-201ENST00000622948 401 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 AC011155.2-201ENST00000623202 216 ntBASIC0.05□□□□□ -2.4
VPS13AQ96RL7 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
VPS13AQ96RL7 SNORD114-16-201ENST00000363044 70 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 SNORD114-3-201ENST00000364969 75 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 RNU6-491P-201ENST00000516099 110 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 IGKV1-22-201ENST00000524313 326 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.04□□□□□ -2.4
VPS13AQ96RL7 FRG1HP-204ENST00000617940 757 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.04□□□□□ -2.4
VPS13AQ96RL7 U3.9-201ENST00000363823 204 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 RNA5SP189-201ENST00000364920 115 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 Y_RNA.468-201ENST00000384298 102 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 MIR224-201ENST00000384889 81 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 MT-TQ-201ENST00000387372 72 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 Y_RNA.583-201ENST00000391033 113 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 BPY2DP-201ENST00000422208 265 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.04□□□□□ -2.4
VPS13AQ96RL7 RNU6-775P-201ENST00000459318 96 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AC019288.1-201ENST00000557918 224 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 FAM60BP-201ENST00000578364 658 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AC078899.2-201ENST00000595282 212 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 ZNF519P1-201ENST00000449011 1626 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 SNORA32.3-201ENST00000384772 121 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 CYP2C59P-201ENST00000457790 269 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AC104417.1-201ENST00000523974 751 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC0.04□□□□□ -2.4
VPS13AQ96RL7 AC091925.2-201ENST00000625059 256 ntBASIC0.04□□□□□ -2.4
VPS13AQ96RL7 MTND4P14-201ENST00000435799 1354 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 MTND4LP11-201ENST00000422184 280 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC0.03□□□□□ -2.4
VPS13AQ96RL7 SNRPFP2-201ENST00000440710 251 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.03□□□□□ -2.4
VPS13AQ96RL7 COX7A2P2-201ENST00000505291 250 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 AC079140.2-201ENST00000506193 142 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 DUXAP10-204ENST00000612052 616 ntBASIC0.03□□□□□ -2.4
VPS13AQ96RL7 TRAPPC2P9-201ENST00000434556 343 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AL713866.2-201ENST00000603579 219 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 SNORD18A-201ENST00000363753 72 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 RNU1-36P-201ENST00000365130 165 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AC013410.2-201ENST00000422627 201 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.02□□□□□ -2.41
VPS13AQ96RL7 SCARNA11.3-201ENST00000517276 130 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 LSM6P2-201ENST00000552208 177 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AC008083.4-201ENST00000615076 444 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC0.02□□□□□ -2.41
VPS13AQ96RL7 PDCL2P1-201ENST00000419302 352 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.02□□□□□ -2.41
VPS13AQ96RL7 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
VPS13AQ96RL7 AL021997.1-201ENST00000605757 193 ntBASIC0.02□□□□□ -2.41
VPS13AQ96RL7 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC0.01□□□□□ -2.41
VPS13AQ96RL7 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.01□□□□□ -2.41
VPS13AQ96RL7 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.01□□□□□ -2.41
VPS13AQ96RL7 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.01□□□□□ -2.41
VPS13AQ96RL7 MIR378F-201ENST00000578143 78 ntBASIC0.01□□□□□ -2.41
VPS13AQ96RL7 AC135507.1-201ENST00000607214 561 ntBASIC0.01□□□□□ -2.41
VPS13AQ96RL7 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.01□□□□□ -2.41
VPS13AQ96RL7 RNA5SP205-201ENST00000364653 136 ntBASIC0.01□□□□□ -2.41
VPS13AQ96RL7 Z83818.1-201ENST00000603584 150 ntBASIC0.01□□□□□ -2.41
VPS13AQ96RL7 AC067838.1-201ENST00000606064 577 ntBASIC0.01□□□□□ -2.41
VPS13AQ96RL7 RNU4-32P-201ENST00000363404 141 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0□□□□□ -2.41
VPS13AQ96RL7 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0□□□□□ -2.41
VPS13AQ96RL7 AC012254.4-201ENST00000588843 273 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 SNORA3A-201ENST00000364113 130 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AL513343.1-201ENST00000451818 792 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AL049830.1-201ENST00000468034 425 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AC011406.1-201ENST00000512440 370 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC0□□□□□ -2.41
VPS13AQ96RL7 RNU6-567P-201ENST00000516746 107 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AL162730.1-201ENST00000605734 292 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AC245060.5-201ENST00000610778 3293 ntBASIC0□□□□□ -2.41
VPS13AQ96RL7 AC010301.1-201ENST00000473936 355 ntBASIC-0□□□□□ -2.41
VPS13AQ96RL7 RNU6ATAC39P-201ENST00000516309 149 ntBASIC-0□□□□□ -2.41
VPS13AQ96RL7 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC-0.01□□□□□ -2.41
VPS13AQ96RL7 MIR365A-201ENST00000362260 87 ntBASIC-0.01□□□□□ -2.41
VPS13AQ96RL7 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.01□□□□□ -2.41
VPS13AQ96RL7 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC-0.01□□□□□ -2.41
VPS13AQ96RL7 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC-0.01□□□□□ -2.41
VPS13AQ96RL7 AL021879.1-201ENST00000611756 288 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms