Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AP001646.1-201ENST00000527936 915 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AC234778.2-201ENST00000566241 354 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 MIR4765-201ENST00000585007 77 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AL670379.4-201ENST00000605279 254 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AL627309.6-201ENST00000606857 840 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 U6.114-201ENST00000636407 96 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AC080128.1-201ENST00000474389 1917 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 MTND4P27-201ENST00000450813 1354 ntBASIC3.15□□□□□ -1.9
SKA1Q96BD8 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SKA1Q96BD8 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SKA1Q96BD8 RNU6-108P-201ENST00000365558 107 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 SNORA7.4-201ENST00000384249 137 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 Y_RNA.510-201ENST00000384511 114 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 BX295541.1-201ENST00000417774 250 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 PIGFP2-201ENST00000421400 651 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 MICF-203ENST00000432679 129 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 RNU6-956P-201ENST00000458868 103 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AL121769.1-201ENST00000469473 401 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 RN7SL499P-201ENST00000481141 276 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SKA1Q96BD8 ACA59.2-201ENST00000517061 156 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC008521.1-201ENST00000587471 187 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AL645944.1-201ENST00000603857 493 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC087045.1-201ENST00000605856 382 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 AL449363.1-201ENST00000617815 186 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 MIR6852-201ENST00000621699 66 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SKA1Q96BD8 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.15□□□□□ -1.91
SKA1Q96BD8 AC135776.4-201ENST00000624300 1904 ntBASIC3.15□□□□□ -1.91
SKA1Q96BD8 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SKA1Q96BD8 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA1Q96BD8 AL359854.1-201ENST00000614203 1594 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 Y_RNA.623-201ENST00000411128 95 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 FABP5P14-201ENST00000437273 393 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 AL583843.1-201ENST00000456070 346 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 FAM92A1P2-202ENST00000504766 877 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 RBBP4P6-201ENST00000508098 202 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 AC023141.11-201ENST00000508864 202 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 AP000873.5-201ENST00000533906 236 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA1Q96BD8 DEFB131E-202ENST00000602581 683 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 AC068790.2-201ENST00000602601 557 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 RPL23AP88-201ENST00000605759 454 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
SKA1Q96BD8 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA1Q96BD8 CKAP2P1-201ENST00000555477 2049 ntBASIC3.14□□□□□ -1.91
SKA1Q96BD8 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA1Q96BD8 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC092447.7-201ENST00000422212 1621 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 Y_RNA.77-201ENST00000362962 107 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 Y_RNA.367-201ENST00000365544 101 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 RNU1-109P-201ENST00000383960 147 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 RNU6-1328P-201ENST00000410938 106 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 RPL19P1-201ENST00000411635 428 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC133104.1-201ENST00000429100 218 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AL627311.1-201ENST00000431514 115 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC022364.2-201ENST00000457963 554 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC022493.1-201ENST00000492984 337 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 RPL22P13-201ENST00000493291 347 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC080014.1-201ENST00000496877 1201 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 ARL2BPP4-201ENST00000506854 471 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 RNA5SP112-201ENST00000515937 99 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 RN7SKP43-201ENST00000516173 320 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC109329.2-201ENST00000519658 482 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA1Q96BD8 MIR2682-201ENST00000580305 110 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 MIR3199-1-201ENST00000582434 88 ntBASIC3.13□□□□□ -1.91
SKA1Q96BD8 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms