Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL121769.1-201ENST00000469473 401 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 TRBV1-201ENST00000476502 284 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC079804.2-201ENST00000490376 200 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC119751.5-201ENST00000514077 770 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC022878.1-201ENST00000530684 149 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 MIR5007-201ENST00000583098 95 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC103810.6-201ENST00000606708 136 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AL365204.3-201ENST00000612448 685 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC009090.3-201ENST00000616553 565 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 Z99571.1-201ENST00000636677 394 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 NACAP2-201ENST00000318548 624 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC062016.1-201ENST00000355719 319 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 U8.3-201ENST00000363321 132 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 MIR518C-201ENST00000384822 101 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 RNU2-52P-201ENST00000410680 190 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC096664.2-201ENST00000411843 406 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 NPM1P11-201ENST00000417106 855 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 COTL1P1-201ENST00000422309 375 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 NUP35P1-201ENST00000422734 947 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 MTND4P4-201ENST00000439033 1366 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 HMGN2P10-201ENST00000448085 265 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 USP9YP12-201ENST00000450481 570 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 MTND3P7-201ENST00000474435 343 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 RPS27P21-201ENST00000486977 252 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 RPL39P36-201ENST00000490784 156 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC105252.1-201ENST00000503089 286 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 MTND1P22-201ENST00000510572 951 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC021739.1-201ENST00000559631 174 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC145350.1-201ENST00000567426 208 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC024619.4-201ENST00000580924 316 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC008121.1-201ENST00000603244 268 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC007621.1-201ENST00000604544 437 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC121334.2-201ENST00000605387 271 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 SNORD14A-201ENST00000606526 91 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AP002360.4-201ENST00000606980 481 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 RNU6-87P-201ENST00000607561 108 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC022893.3-201ENST00000607665 437 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC091304.6-201ENST00000619761 202 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 AC010889.1-201ENST00000566193 2666 ntBASIC2.04□□□□□ -2.08
CCDC54Q8NEL0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RNU6-960P-201ENST00000364056 120 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MIR128-1-201ENST00000384921 82 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RNU6-817P-201ENST00000391083 104 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AL591416.1-201ENST00000404015 867 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 NDUFS5P4-201ENST00000412983 318 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RPL17P12-201ENST00000413391 526 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MTND2P18-201ENST00000419962 1030 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MTND4P20-201ENST00000424125 869 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AL353729.1-201ENST00000425044 720 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC092447.3-201ENST00000426027 686 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC007560.1-201ENST00000426912 237 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC104850.1-201ENST00000435940 476 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MTND6P13-201ENST00000443510 523 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RPS27AP8-201ENST00000452665 445 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MTCYBP1-201ENST00000454315 1119 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RN7SL432P-201ENST00000484057 298 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 SLC25A15P5-201ENST00000508033 253 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC026436.1-201ENST00000510537 270 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RNU6-914P-201ENST00000516749 109 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms