Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC007458.1-201ENST00000542812 373 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 TRAV28-201ENST00000557548 323 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC090132.2-201ENST00000615881 347 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC240442.1-201ENST00000616055 283 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC097372.5-201ENST00000623665 376 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 SCARNA4-201ENST00000629045 128 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 Z73965.1-201ENST00000623412 2297 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AP001148.1-201ENST00000624124 2359 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 HSPA8P1-201ENST00000425843 1833 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-78P-201ENST00000362897 107 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.83-201ENST00000363005 113 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RNU1-20P-201ENST00000363314 162 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.150-201ENST00000363562 102 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-72P-201ENST00000384285 79 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 MIR585-201ENST00000384887 94 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.793-201ENST00000411222 111 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RAD17P1-201ENST00000418130 2042 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RPS12P23-201ENST00000419579 400 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 AL162591.2-201ENST00000449634 317 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 NDUFB4P10-201ENST00000452541 359 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 snoU13.30-201ENST00000458951 104 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.644-201ENST00000459006 113 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RN7SL817P-201ENST00000480777 288 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.674-201ENST00000516362 113 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RNA5SP165-201ENST00000517142 115 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 HMGB1P14-201ENST00000557424 591 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RPL21P7-201ENST00000557463 483 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 RN7SL176P-201ENST00000580352 264 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 SNRPGP15-201ENST00000600149 222 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 AC099506.2-201ENST00000623074 221 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 MAPK10-320ENST00000641462 6696 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 MAPK10-303ENST00000641324 3959 ntBASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.25□□□□□ -1.73
UBE3DQ7Z6J8 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AC118273.1-201ENST00000525324 3006 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AL157777.2-201ENST00000258070 137 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 RNU1-94P-201ENST00000362627 173 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.143-201ENST00000363520 106 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 SNORD115-32-201ENST00000364079 82 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.269-201ENST00000364685 89 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.277-201ENST00000364754 102 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-290P-201ENST00000365212 101 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.541-201ENST00000384640 113 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 RNA5SP332-201ENST00000391063 115 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 MIR937-201ENST00000401271 86 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AL358453.1-201ENST00000422522 250 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AC007919.1-201ENST00000429380 217 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 SNORD108-201ENST00000459332 71 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 RPL7AP28-201ENST00000464513 571 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 SERF1AP1-201ENST00000514575 187 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AL160290.3-201ENST00000604869 165 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 RMST_6.1-201ENST00000611980 203 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 LINC00901.1-201ENST00000617252 152 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 AC127459.3-201ENST00000624328 466 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 OR56B2P-202ENST00000641377 2453 ntBASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
UBE3DQ7Z6J8 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 214.4 ms