Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA1P55317 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 RNU7-59P-201ENST00000459101 61 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 RPL37P6-201ENST00000460682 294 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC072039.1-201ENST00000477611 581 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC068587.2-201ENST00000478386 781 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 RPS27AP10-201ENST00000496103 208 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC098591.2-201ENST00000510152 315 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 LTV1P1-201ENST00000510683 1237 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 RNA5SP182-201ENST00000516064 82 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC093012.1-202ENST00000549403 582 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA1P55317 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA1P55317 MIR544B-201ENST00000582372 78 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 NRBF2P1-201ENST00000587407 859 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC008749.1-201ENST00000597650 306 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA1P55317 AL096840.1-201ENST00000603287 93 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 BCRP9-201ENST00000605312 388 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 SDR42E1P4-201ENST00000620894 481 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.64□□□□□ -2.15
FOXA1P55317 AC106754.1-201ENST00000562632 1513 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA1P55317 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA1P55317 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA1P55317 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-1167P-201ENST00000363227 94 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-778P-201ENST00000363269 103 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNA5SP99-201ENST00000364020 114 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-157P-201ENST00000383957 107 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-769P-201ENST00000384407 104 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-750P-201ENST00000390946 107 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-482P-201ENST00000391068 107 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AL359634.1-202ENST00000404721 284 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-1328P-201ENST00000410938 106 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.63□□□□□ -2.15
FOXA1P55317 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.63□□□□□ -2.15
FOXA1P55317 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.63□□□□□ -2.15
FOXA1P55317 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.63□□□□□ -2.15
FOXA1P55317 SKA2P1-201ENST00000425592 390 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.63□□□□□ -2.15
FOXA1P55317 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.63□□□□□ -2.15
FOXA1P55317 DUXAP8-207ENST00000456786 622 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC055855.1-201ENST00000489563 579 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA1P55317 RNU2-44P-201ENST00000516795 194 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RNU6-64P-201ENST00000517119 105 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 RN7SKP258-201ENST00000517151 304 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC105185.1-201ENST00000518705 535 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC1.63□□□□□ -2.15
FOXA1P55317 AC013828.2-201ENST00000532487 235 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.63□□□□□ -2.15
FOXA1P55317 DUXAP1-201ENST00000556632 463 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.63□□□□□ -2.15
FOXA1P55317 MIR3908-201ENST00000579798 126 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 BNIP3P23-201ENST00000599655 511 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC007349.4-201ENST00000608114 532 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AL139418.1-201ENST00000613613 177 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AC084768.2-201ENST00000622736 221 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 AL136313.1-201ENST00000624804 202 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.63□□□□□ -2.15
FOXA1P55317 U2.21-201ENST00000637295 81 ntBASIC1.63□□□□□ -2.15
FOXA1P55317 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
FOXA1P55317 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.63□□□□□ -2.15
FOXA1P55317 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA1P55317 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA1P55317 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA1P55317 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
FOXA1P55317 AL356292.1-201ENST00000283110 373 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA1P55317 MTCO2P21-201ENST00000419780 677 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AC007560.1-201ENST00000426912 237 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 MED14P1-201ENST00000430517 648 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXA1P55317 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA1P55317 AL136380.1-201ENST00000447970 162 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.62□□□□□ -2.15
FOXA1P55317 RPL23AP63-201ENST00000498752 471 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
FOXA1P55317 AC116337.1-201ENST00000509680 687 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.62□□□□□ -2.15
FOXA1P55317 RNU5F-8P-201ENST00000515941 111 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 RNU6-991P-201ENST00000516168 107 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 RNA5SP165-201ENST00000517142 115 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 SCARNA11.3-201ENST00000517276 130 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXA1P55317 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXA1P55317 AP000907.2-201ENST00000530827 353 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AP004247.1-201ENST00000531556 1289 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA1P55317 AK6P1-201ENST00000540219 478 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms