Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GPM6BP1-201ENST00000446387 144 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 RPL7P12-201ENST00000446719 750 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AL360271.2-201ENST00000447710 161 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 RPL12P25-201ENST00000455592 494 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 RPL21P41-201ENST00000459863 264 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC007547.1-201ENST00000462177 490 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 RPS23P3-201ENST00000470993 430 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXA1P49639 MTND3P25-201ENST00000509243 135 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 RNU2-69P-201ENST00000516061 100 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXA1P49639 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXA1P49639 AP006245.1-201ENST00000522549 120 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXA1P49639 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXA1P49639 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXA1P49639 AP000763.2-201ENST00000540641 163 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC026333.2-201ENST00000542164 106 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
HOXA1P49639 OR11H5P-201ENST00000554039 926 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXA1P49639 AC026464.5-201ENST00000562497 722 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.83□□□□□ -1.96
HOXA1P49639 AC091135.1-201ENST00000585943 307 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 VN1R80P-201ENST00000597126 338 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC107871.2-201ENST00000612894 502 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC093913.1-201ENST00000614178 329 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXA1P49639 AL133216.2-202ENST00000634512 349 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 AC007785.2-201ENST00000598627 1916 ntBASIC2.83□□□□□ -1.96
HOXA1P49639 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXA1P49639 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 FAM35BP-202ENST00000497389 3337 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 AC126755.2-208ENST00000327792 462 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC138969.1-213ENST00000331436 462 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNU6-371P-201ENST00000364283 108 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNA5SP283-201ENST00000365604 119 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNU6-741P-201ENST00000383889 107 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNU6-1009P-201ENST00000390996 107 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 MIR1290-201ENST00000408735 78 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RPL23AP82-202ENST00000427528 469 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AL512844.2-201ENST00000433990 593 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXA1P49639 MRPL50P4-201ENST00000446432 475 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC092001.1-201ENST00000453012 261 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNU7-66P-201ENST00000459469 62 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RPL37P6-201ENST00000460682 294 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AL133162.1-201ENST00000463228 453 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 CENPBD1P1-201ENST00000464061 469 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AP000852.1-201ENST00000472460 573 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RPL23AP11-201ENST00000475260 469 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AL160314.1-201ENST00000490836 438 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC022493.1-201ENST00000492984 337 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 Y_RNA.654-201ENST00000497848 106 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 FAM206BP-201ENST00000510179 541 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.82□□□□□ -1.96
HOXA1P49639 RNU7-30P-201ENST00000516835 62 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 SNORD59.2-201ENST00000516873 68 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNU6-1315P-201ENST00000517187 99 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXA1P49639 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXA1P49639 ATP5F1P5-201ENST00000526403 760 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RAB11AP2-201ENST00000545905 639 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 PSMA3P-201ENST00000555485 635 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXA1P49639 TRAV28-201ENST00000557548 323 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXA1P49639 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXA1P49639 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.82□□□□□ -1.96
HOXA1P49639 MIR4742-201ENST00000581069 85 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 MIR3942-201ENST00000585264 109 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 Z82243.1-201ENST00000609432 473 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC107294.1-201ENST00000609524 467 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC104985.2-201ENST00000620598 500 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXA1P49639 MIR6733-201ENST00000635723 61 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 AC112487.2-201ENST00000637950 304 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXA1P49639 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.82□□□□□ -1.96
HOXA1P49639 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXA1P49639 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.82□□□□□ -1.96
HOXA1P49639 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXA1P49639 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXA1P49639 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXA1P49639 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXA1P49639 Y_RNA.184-201ENST00000363884 108 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 Y_RNA.356-201ENST00000365475 113 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 RNU6-45P-201ENST00000384471 107 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AL122016.1-201ENST00000403365 367 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AL356432.1-201ENST00000405809 419 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 RPL19P1-201ENST00000411635 428 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 AC009161.1-201ENST00000417306 376 ntBASIC2.81□□□□□ -1.96
HOXA1P49639 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXA1P49639 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms