Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNA5SP165-201ENST00000517142 115 ntBASIC0.89□□□□□ -2.27
CUX1P39880 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 AC004923.2-201ENST00000529649 369 ntBASIC0.89□□□□□ -2.27
CUX1P39880 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.89□□□□□ -2.27
CUX1P39880 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.89□□□□□ -2.27
CUX1P39880 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.89□□□□□ -2.27
CUX1P39880 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.89□□□□□ -2.27
CUX1P39880 AC146944.4-201ENST00000602697 718 ntBASIC0.89□□□□□ -2.27
CUX1P39880 AC087045.1-201ENST00000605856 382 ntBASIC0.89□□□□□ -2.27
CUX1P39880 AP002826.1-201ENST00000608835 315 ntBASIC0.89□□□□□ -2.27
CUX1P39880 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.89□□□□□ -2.27
CUX1P39880 AC002550.2-201ENST00000621246 394 ntBASIC0.89□□□□□ -2.27
CUX1P39880 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
CUX1P39880 RNU1-23P-201ENST00000363361 144 ntBASIC0.88□□□□□ -2.27
CUX1P39880 Y_RNA.167-201ENST00000363735 109 ntBASIC0.88□□□□□ -2.27
CUX1P39880 RNU6-173P-201ENST00000364215 104 ntBASIC0.88□□□□□ -2.27
CUX1P39880 MIR515-2-201ENST00000384883 83 ntBASIC0.88□□□□□ -2.27
CUX1P39880 MIR515-1-201ENST00000384884 83 ntBASIC0.88□□□□□ -2.27
CUX1P39880 PRRC2CP1-201ENST00000404428 159 ntBASIC0.88□□□□□ -2.27
CUX1P39880 RNU6-712P-201ENST00000410558 100 ntBASIC0.88□□□□□ -2.27
CUX1P39880 GTF2IP20-201ENST00000431663 360 ntBASIC0.88□□□□□ -2.27
CUX1P39880 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.88□□□□□ -2.27
CUX1P39880 AC008379.1-201ENST00000463655 464 ntBASIC0.88□□□□□ -2.27
CUX1P39880 SCARNA11.3-201ENST00000517276 130 ntBASIC0.88□□□□□ -2.27
CUX1P39880 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.88□□□□□ -2.27
CUX1P39880 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.88□□□□□ -2.27
CUX1P39880 HMGB1P14-201ENST00000557424 591 ntBASIC0.88□□□□□ -2.27
CUX1P39880 AC004817.2-201ENST00000561794 651 ntBASIC0.88□□□□□ -2.27
CUX1P39880 MIR3126-201ENST00000577443 74 ntBASIC0.88□□□□□ -2.27
CUX1P39880 MIR4653-201ENST00000585107 83 ntBASIC0.88□□□□□ -2.27
CUX1P39880 AC016925.2-201ENST00000605108 242 ntBASIC0.88□□□□□ -2.27
CUX1P39880 AP000254.1-201ENST00000609934 520 ntBASIC0.88□□□□□ -2.27
CUX1P39880 AC243829.6-201ENST00000612652 106 ntBASIC0.88□□□□□ -2.27
CUX1P39880 Z69720.2-201ENST00000624755 279 ntBASIC0.88□□□□□ -2.27
CUX1P39880 AC087821.2-201ENST00000637086 450 ntBASIC0.88□□□□□ -2.27
CUX1P39880 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
CUX1P39880 AC010329.5-201ENST00000623497 2174 ntBASIC0.87□□□□□ -2.27
CUX1P39880 Y_RNA.62-201ENST00000362840 99 ntBASIC0.87□□□□□ -2.27
CUX1P39880 MIR618-201ENST00000385287 98 ntBASIC0.87□□□□□ -2.27
CUX1P39880 MTATP6P31-201ENST00000406985 692 ntBASIC0.87□□□□□ -2.27
CUX1P39880 EDDM3CP-201ENST00000415977 425 ntBASIC0.87□□□□□ -2.27
CUX1P39880 NDUFA5P10-201ENST00000432147 357 ntBASIC0.87□□□□□ -2.27
CUX1P39880 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.87□□□□□ -2.27
CUX1P39880 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
CUX1P39880 AC008494.2-201ENST00000514544 370 ntBASIC0.87□□□□□ -2.27
CUX1P39880 SNORA62.5-201ENST00000516634 120 ntBASIC0.87□□□□□ -2.27
CUX1P39880 APOOP3-201ENST00000536787 586 ntBASIC0.87□□□□□ -2.27
CUX1P39880 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.87□□□□□ -2.27
CUX1P39880 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.87□□□□□ -2.27
CUX1P39880 RNU6-270P-201ENST00000364131 105 ntBASIC0.86□□□□□ -2.27
CUX1P39880 SNORA25.8-201ENST00000364831 128 ntBASIC0.86□□□□□ -2.27
CUX1P39880 CST2P1-201ENST00000425770 87 ntBASIC0.86□□□□□ -2.27
CUX1P39880 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.86□□□□□ -2.27
CUX1P39880 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.86□□□□□ -2.27
CUX1P39880 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.86□□□□□ -2.27
CUX1P39880 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.86□□□□□ -2.27
CUX1P39880 RNU6-420P-201ENST00000458780 107 ntBASIC0.86□□□□□ -2.27
CUX1P39880 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
CUX1P39880 MTCYBP27-201ENST00000555160 670 ntBASIC0.86□□□□□ -2.27
CUX1P39880 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.86□□□□□ -2.27
CUX1P39880 MIR3198-2-201ENST00000577868 80 ntBASIC0.86□□□□□ -2.27
CUX1P39880 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.86□□□□□ -2.27
CUX1P39880 SNRPEP3-201ENST00000338402 276 ntBASIC0.85□□□□□ -2.27
CUX1P39880 RNU6-989P-201ENST00000362756 107 ntBASIC0.85□□□□□ -2.27
CUX1P39880 U3.13-201ENST00000364804 214 ntBASIC0.85□□□□□ -2.27
CUX1P39880 AC099677.1-201ENST00000420575 175 ntBASIC0.85□□□□□ -2.27
CUX1P39880 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.85□□□□□ -2.27
CUX1P39880 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.85□□□□□ -2.27
CUX1P39880 PTENP1-201ENST00000447117 1215 ntBASIC0.85□□□□□ -2.27
CUX1P39880 AC147055.4-201ENST00000504399 745 ntBASIC0.85□□□□□ -2.27
CUX1P39880 POLR2KP1-201ENST00000553226 168 ntBASIC0.85□□□□□ -2.27
CUX1P39880 AC068276.1-201ENST00000605793 379 ntBASIC0.85□□□□□ -2.27
CUX1P39880 MIR338-201ENST00000636369 67 ntBASIC0.85□□□□□ -2.27
CUX1P39880 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
CUX1P39880 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.84□□□□□ -2.27
CUX1P39880 RNU6-362P-201ENST00000516736 90 ntBASIC0.84□□□□□ -2.27
CUX1P39880 AC092470.1-201ENST00000546187 132 ntBASIC0.84□□□□□ -2.27
CUX1P39880 AL133241.1-201ENST00000556832 487 ntBASIC0.84□□□□□ -2.27
CUX1P39880 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.84□□□□□ -2.27
CUX1P39880 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.84□□□□□ -2.27
CUX1P39880 AC091925.2-201ENST00000625059 256 ntBASIC0.84□□□□□ -2.27
CUX1P39880 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
CUX1P39880 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.84□□□□□ -2.28
CUX1P39880 RNU6-1164P-201ENST00000364428 107 ntBASIC0.84□□□□□ -2.28
CUX1P39880 Y_RNA.303-201ENST00000364998 94 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AL136372.1-201ENST00000403060 228 ntBASIC0.84□□□□□ -2.28
CUX1P39880 MIR1912-201ENST00000410389 80 ntBASIC0.84□□□□□ -2.28
CUX1P39880 RNU2-70P-201ENST00000410718 179 ntBASIC0.84□□□□□ -2.28
CUX1P39880 PIGPP2-201ENST00000411569 458 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.84□□□□□ -2.28
CUX1P39880 AL591043.1-201ENST00000432461 424 ntBASIC0.84□□□□□ -2.28
CUX1P39880 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.84□□□□□ -2.28
CUX1P39880 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.84□□□□□ -2.28
CUX1P39880 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.84□□□□□ -2.28
CUX1P39880 RNU5F-8P-201ENST00000515941 111 ntBASIC0.84□□□□□ -2.28
CUX1P39880 SNORA44.1-201ENST00000517031 108 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AC008562.1-201ENST00000521763 330 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AC093510.2-201ENST00000562820 896 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.84□□□□□ -2.28
CUX1P39880 AC093838.1-201ENST00000613014 469 ntBASIC0.84□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms