Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL592221.1-201ENST00000605266 382 ntBASIC1.58□□□□□ -2.16
COL5A3P25940 AC243773.3-201ENST00000613270 256 ntBASIC1.58□□□□□ -2.16
COL5A3P25940 AC009318.4-201ENST00000620496 486 ntBASIC1.58□□□□□ -2.16
COL5A3P25940 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.58□□□□□ -2.16
COL5A3P25940 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.58□□□□□ -2.16
COL5A3P25940 AP000648.3-201ENST00000623539 4507 ntBASIC1.58□□□□□ -2.16
COL5A3P25940 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
COL5A3P25940 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
COL5A3P25940 RNU6-203P-201ENST00000384038 104 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RNU6-1122P-201ENST00000384449 107 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RNU6-83P-201ENST00000384568 112 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 MIR506-201ENST00000384998 124 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 MIR548J-201ENST00000408833 112 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC074117.2-201ENST00000417130 397 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.57□□□□□ -2.16
COL5A3P25940 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 MTND4P6-201ENST00000438297 472 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 AL353691.1-201ENST00000451332 387 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 AL031183.1-201ENST00000457667 207 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RPS27P21-201ENST00000486977 252 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 SUMO2P6-201ENST00000505273 288 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 ARL2BPP4-201ENST00000506854 471 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RNU6-1095P-201ENST00000516148 108 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RNU6-1225P-201ENST00000516336 65 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 ANP32BP3-201ENST00000559213 706 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC1.57□□□□□ -2.16
COL5A3P25940 SULT1C2P1-202ENST00000562418 459 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 MTATP6P24-201ENST00000576835 677 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC008739.2-201ENST00000597006 317 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC106900.2-201ENST00000604994 317 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AP002826.1-201ENST00000608835 315 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AL513185.3-201ENST00000433335 1300 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL5A3P25940 AL161722.3-201ENST00000605789 2983 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL5A3P25940 AC007098.1-201ENST00000420122 367 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 MTND5P25-201ENST00000430499 799 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 EZH2P1-201ENST00000431167 291 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 RNA5SP233-201ENST00000459153 113 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RPS3AP22-201ENST00000488297 769 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.57□□□□□ -2.16
COL5A3P25940 SNORA48.10-201ENST00000516965 160 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 HSPA8P13-201ENST00000523715 472 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 SLC2A13P1-201ENST00000531560 322 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.57□□□□□ -2.16
COL5A3P25940 AC125611.1-201ENST00000549563 229 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 HSPE1P3-201ENST00000559254 309 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AL391001.1-201ENST00000602747 715 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AL158042.1-201ENST00000605338 460 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC107952.2-201ENST00000606048 486 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AP000484.1-201ENST00000620067 1252 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AL031601.2-202ENST00000622650 282 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC004009.2-201ENST00000623016 728 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.57□□□□□ -2.16
COL5A3P25940 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL5A3P25940 CDR1-202ENST00000625883 1485 ntBASIC1.57□□□□□ -2.16
COL5A3P25940 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.56□□□□□ -2.16
COL5A3P25940 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
COL5A3P25940 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL5A3P25940 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL5A3P25940 RNU6-1197P-201ENST00000391183 107 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 RNU2-40P-201ENST00000410833 196 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 AC068533.2-201ENST00000411872 306 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.56□□□□□ -2.16
COL5A3P25940 AC018630.2-202ENST00000422992 927 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 AC010099.3-201ENST00000423896 409 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 AC234781.2-201ENST00000426370 994 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 PSMA6P3-201ENST00000428242 164 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.56□□□□□ -2.16
COL5A3P25940 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.56□□□□□ -2.16
COL5A3P25940 AC084290.1-201ENST00000434995 374 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 MTND2P20-201ENST00000440805 661 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 SNORD11.1-201ENST00000459482 85 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.56□□□□□ -2.16
COL5A3P25940 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.56□□□□□ -2.16
COL5A3P25940 COX7A2P2-201ENST00000505291 250 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 AC109445.1-201ENST00000512356 383 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 RNU6-311P-201ENST00000516224 102 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 RN7SKP265-201ENST00000516448 223 ntBASIC1.56□□□□□ -2.16
COL5A3P25940 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.56□□□□□ -2.16
COL5A3P25940 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL5A3P25940 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms