Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL161798.1-201ENST00000604630 131 ntBASIC3.47□□□□□ -1.85
VPS4AQ9UN37 Y_RNA.804-201ENST00000615262 101 ntBASIC3.47□□□□□ -1.85
VPS4AQ9UN37 AC103705.1-201ENST00000619013 241 ntBASIC3.47□□□□□ -1.85
VPS4AQ9UN37 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS4AQ9UN37 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS4AQ9UN37 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS4AQ9UN37 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS4AQ9UN37 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
VPS4AQ9UN37 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 UBE2L2-201ENST00000254302 429 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RNU6-1167P-201ENST00000363227 94 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.142-201ENST00000363491 102 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 SNORA38.1-201ENST00000364172 131 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.530-201ENST00000384587 101 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 SNORA48.2-201ENST00000390926 124 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 CISD1P1-201ENST00000393907 327 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 TAAR7P-201ENST00000436141 242 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RPL7P12-201ENST00000446719 750 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AMD1P1-201ENST00000457220 922 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RNU6-329P-201ENST00000459618 107 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RPL21P10-201ENST00000463521 490 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RN7SL807P-201ENST00000470923 297 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RPL7P5-201ENST00000471472 736 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 SUMO2P6-201ENST00000505273 288 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 TTC39CP1-201ENST00000512513 755 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC104136.1-201ENST00000512969 394 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 RN7SKP13-201ENST00000515933 244 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 IGHV3-76-201ENST00000522465 295 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC011611.1-201ENST00000552179 197 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC090115.3-201ENST00000553218 849 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 MIR4425-201ENST00000580572 84 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 VN1R80P-201ENST00000597126 338 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AL670379.4-201ENST00000605279 254 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AL359314.1-201ENST00000616913 261 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AP003400.5-201ENST00000624827 617 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 SNORA50A-202ENST00000629536 136 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 AC002546.1-201ENST00000588041 2504 ntBASIC3.46□□□□□ -1.86
VPS4AQ9UN37 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS4AQ9UN37 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.61-201ENST00000362835 102 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 U3.42-201ENST00000408746 214 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 RNU2-33P-201ENST00000410344 192 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 POLHP1-201ENST00000411806 470 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 MTND3P8-201ENST00000412909 339 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 USP9YP20-201ENST00000419224 558 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 BX842559.1-201ENST00000419615 532 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AC097713.2-201ENST00000430199 356 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 MTND3P23-201ENST00000431980 347 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 FABP5P15-201ENST00000453566 214 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 TRBV1-201ENST00000476502 284 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 RPL31P60-201ENST00000478450 367 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 MTND3P22-201ENST00000510932 243 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 RNU2-69P-201ENST00000516061 100 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 ATP5F1P5-201ENST00000526403 760 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AL158032.1-201ENST00000605401 106 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AC107294.1-201ENST00000609524 467 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AL359697.1-201ENST00000624879 587 ntBASIC3.45□□□□□ -1.86
VPS4AQ9UN37 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS4AQ9UN37 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 RNA5SP42-201ENST00000364278 115 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 RNU6-715P-201ENST00000365204 103 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 SNORA4.3-201ENST00000365564 137 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.500-201ENST00000384466 111 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 RNU6-831P-201ENST00000384548 107 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 MT-TD-201ENST00000387419 68 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 SNORD70.1-201ENST00000391007 85 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS4AQ9UN37 AL356432.1-201ENST00000405809 419 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 BX682237.1-201ENST00000415016 335 ntBASIC3.44□□□□□ -1.86
VPS4AQ9UN37 PRPS1P1-201ENST00000445305 876 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms