Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RNU6-81P-201ENST00000365608 104 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 Y_RNA.380-201ENST00000365663 111 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 Y_RNA.530-201ENST00000384587 101 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 MIR613-201ENST00000385248 95 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 NDUFS5P1-201ENST00000405668 289 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RPS26P15-201ENST00000488067 348 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC022447.4-201ENST00000504053 364 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AL137161.1-201ENST00000532231 390 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC068446.3-201ENST00000555285 382 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC023813.4-201ENST00000607580 580 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC098657.3-201ENST00000620434 263 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC068254.2-201ENST00000623938 3577 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC130650.2-201ENST00000618736 2403 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AL031595.2-201ENST00000624215 19071 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RNA5SP258-201ENST00000362750 119 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RNU6-1252P-201ENST00000363054 104 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 SNORD27-201ENST00000363981 72 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RNA5SP104-201ENST00000410989 118 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RPS20P5-201ENST00000434808 360 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 GMFBP1-201ENST00000467831 427 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC004062.1-201ENST00000509926 645 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RNA5SP454-201ENST00000517231 127 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 OR5D17P-201ENST00000531492 978 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 HSPE1P20-201ENST00000538133 289 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC060771.1-201ENST00000582031 164 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AC105224.1-201ENST00000587055 421 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 AP001029.3-201ENST00000588063 596 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 uc_338.12-201ENST00000616344 181 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 Y_RNA.106-201ENST00000363189 100 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RNU6-38P-201ENST00000384085 107 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RNU6-378P-201ENST00000384324 107 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RNA5SP296-201ENST00000410523 111 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RNU6-193P-201ENST00000410977 107 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RN7SKP53-201ENST00000411337 315 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 PSMA6P3-201ENST00000428242 164 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AC108059.3-201ENST00000456388 214 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RNU6-333P-201ENST00000459117 107 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AL049714.1-201ENST00000466686 347 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AC055855.1-201ENST00000489563 579 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 RNU6-346P-201ENST00000516288 111 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 SCARNA24.1-201ENST00000516465 137 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 MYL12AP1-201ENST00000518490 515 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AC012433.1-201ENST00000588916 398 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 AC092447.9-201ENST00000603395 144 ntBASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL17A1Q9UMD9 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 RNU6-190P-201ENST00000384154 102 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 RNU6-1117P-201ENST00000384525 104 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 RNU6-278P-201ENST00000390945 109 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 RNA5SP39-201ENST00000411245 120 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AC021382.1-201ENST00000483523 359 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 RN7SL432P-201ENST00000484057 298 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 MZT1P2-201ENST00000604387 248 ntBASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL17A1Q9UMD9 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms