Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SNORA75-201ENST00000384158 137 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RNU6-348P-201ENST00000384386 107 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RNU6-140P-201ENST00000384566 108 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AL079342.1-201ENST00000401460 267 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RNU2-39P-201ENST00000410604 198 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RNU6-248P-201ENST00000410720 107 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 PIGFP2-201ENST00000421400 651 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 TRIAP1P1-201ENST00000427062 225 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RPS24P1-201ENST00000438550 371 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 Z82210.1-201ENST00000440037 231 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC092798.1-201ENST00000458542 409 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RPS27AP9-201ENST00000477681 438 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RAP1BP2-201ENST00000478270 544 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC022616.3-201ENST00000523940 148 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AP006587.4-201ENST00000526053 529 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AL391840.1-201ENST00000571144 367 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 MTND1P15-201ENST00000579262 949 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC245008.1-201ENST00000608123 476 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC091834.1-201ENST00000614543 472 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AC034102.8-201ENST00000615146 484 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 AL161629.2-201ENST00000615347 275 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 MTND1P37-201ENST00000636562 264 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 ZNF72P-201ENST00000425869 1908 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 SNORD114-1-201ENST00000362705 72 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 RNU6-1167P-201ENST00000363227 94 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 RNU5A-6P-201ENST00000384136 116 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 Y_RNA.559-201ENST00000384686 107 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 DEFB108C-201ENST00000400154 252 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 RNU2-33P-201ENST00000410344 192 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 Z85995.1-201ENST00000415547 335 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 DPH3P2-201ENST00000422618 250 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 ZNF863P-201ENST00000426746 417 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AL356320.1-201ENST00000429616 163 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 RPL21P99-201ENST00000480369 423 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC234781.5-201ENST00000508429 271 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC117522.1-201ENST00000509821 380 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC009163.5-201ENST00000575421 637 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC098848.2-201ENST00000588023 330 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC068790.2-201ENST00000602601 557 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AL133393.1-201ENST00000603277 287 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 BNIP3P9-201ENST00000603714 553 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AL161729.4-201ENST00000604650 476 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AL136363.1-201ENST00000605349 337 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AL020991.1-201ENST00000612314 373 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 AC011939.3-201ENST00000613686 466 ntBASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF541Q9H0D2 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RNU4-1-201ENST00000363925 141 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RNU6-960P-201ENST00000364056 120 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 OR5H15-201ENST00000383696 930 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RNU6-39P-201ENST00000384344 107 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RNU6-456P-201ENST00000384493 107 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 GPM6BP2-201ENST00000432046 144 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AL358934.1-201ENST00000432346 324 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 GPM6BP1-201ENST00000446387 144 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 MTCO2P7-201ENST00000446518 666 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 MTCO2P18-201ENST00000457151 658 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AC087588.1-201ENST00000462203 316 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RPL7P5-201ENST00000471472 736 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RPS3AP17-201ENST00000472594 777 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RNU6-677P-201ENST00000516914 101 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AP002963.1-201ENST00000530590 184 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AP000867.2-201ENST00000532468 320 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 MIR1273D-201ENST00000577266 86 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 GLUD1P4-201ENST00000590914 418 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AC007363.1-201ENST00000604736 620 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AP002360.4-201ENST00000606980 481 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 AL138880.2-201ENST00000616214 239 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms