Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 RNU1-35P-201ENST00000362782 153 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 RN7SKP224-201ENST00000364140 325 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 RNU1-63P-201ENST00000383902 164 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 BTF3L4P2-201ENST00000392798 346 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 RPS16P5-201ENST00000406501 404 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 RPS12P10-201ENST00000427031 377 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AP000907.1-201ENST00000428428 510 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC006026.2-201ENST00000457376 180 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC092798.1-201ENST00000458542 409 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC008897.1-201ENST00000494006 347 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-1012P-201ENST00000516606 109 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC060766.3-201ENST00000591442 263 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC091905.2-201ENST00000623143 306 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AC007785.2-201ENST00000598627 1916 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.28□□□□□ -1.73
UBE3DQ7Z6J8 LINC01109-201ENST00000603837 3081 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC007390.2-201ENST00000606229 3803 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.54-201ENST00000362766 105 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.65-201ENST00000362846 100 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 Y_RNA.123-201ENST00000363338 102 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-629P-201ENST00000384061 103 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-1181P-201ENST00000384191 106 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 RPL7AP25-201ENST00000423357 805 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC007560.1-201ENST00000426912 237 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 RPL21P40-201ENST00000428586 483 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC012671.1-201ENST00000451912 203 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 HMGB1P22-201ENST00000505315 124 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-572P-201ENST00000516724 80 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC134698.5-201ENST00000519444 336 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 ATP5J2P6-201ENST00000565203 266 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 U2.14-201ENST00000615943 113 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 MIR6715B-201ENST00000637172 77 ntBASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
UBE3DQ7Z6J8 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-428P-201ENST00000362942 107 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-336P-201ENST00000364891 107 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 SNORD63-201ENST00000384262 68 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 MIR1298-201ENST00000408783 112 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RNU2-68P-201ENST00000410878 191 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RPL23AP1-201ENST00000428990 471 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RPS29P33-201ENST00000456717 146 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 snoU13.24-201ENST00000458998 104 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RNU7-87P-201ENST00000459343 62 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC034236.1-201ENST00000469891 373 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC010285.1-201ENST00000470580 392 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 RNU6-1212P-201ENST00000517023 104 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 SNORA31.18-201ENST00000517043 134 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.26□□□□□ -1.73
UBE3DQ7Z6J8 AP006245.1-201ENST00000522549 120 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 174.3 ms