Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC073308.1-201ENST00000623696 305 ntBASIC1.15□□□□□ -2.22
CHD3Q12873 ZNF702P-202ENST00000434269 1966 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 MTND5P11-201ENST00000511037 1812 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 RNU6-657P-201ENST00000383904 107 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 MIR888-201ENST00000401186 77 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 AL592310.1-201ENST00000414330 671 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 RPS24P7-201ENST00000416921 246 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.15□□□□□ -2.23
CHD3Q12873 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.15□□□□□ -2.23
CHD3Q12873 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.15□□□□□ -2.23
CHD3Q12873 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CHD3Q12873 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CHD3Q12873 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.15□□□□□ -2.23
CHD3Q12873 AC023790.1-201ENST00000482174 347 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 AC103833.1-201ENST00000517442 172 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.15□□□□□ -2.23
CHD3Q12873 AC016957.1-201ENST00000534895 309 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.15□□□□□ -2.23
CHD3Q12873 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC1.15□□□□□ -2.23
CHD3Q12873 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.15□□□□□ -2.23
CHD3Q12873 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.15□□□□□ -2.23
CHD3Q12873 MIR6788-201ENST00000618842 66 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 AC091895.1-201ENST00000624494 256 ntBASIC1.15□□□□□ -2.23
CHD3Q12873 MTND5P30-201ENST00000452896 1731 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 SNRPEP3-201ENST00000338402 276 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 RNU1-62P-201ENST00000362599 164 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 RNU6-1080P-201ENST00000383982 107 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 MTCO3P1-205ENST00000422088 832 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 VN1R42P-201ENST00000424651 344 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 GTF2IP20-201ENST00000431663 360 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 AC098831.1-201ENST00000440661 216 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 MRPL42P4-201ENST00000453267 443 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.14□□□□□ -2.23
CHD3Q12873 FO393415.2-201ENST00000480085 343 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CHD3Q12873 OR9N1P-202ENST00000494289 481 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 SCARNA15.2-201ENST00000516409 127 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.14□□□□□ -2.23
CHD3Q12873 AC090888.1-201ENST00000561335 1141 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 MIR4789-201ENST00000577469 82 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 MIR4299-201ENST00000577899 72 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 AC011712.1-201ENST00000588959 234 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 AC003001.2-201ENST00000616294 831 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 uc_338.12-201ENST00000616344 181 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.14□□□□□ -2.23
CHD3Q12873 AC040168.1-201ENST00000623594 991 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 ZNF663P-202ENST00000641770 1131 ntBASIC1.14□□□□□ -2.23
CHD3Q12873 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CHD3Q12873 RNU5A-1-201ENST00000362698 116 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 RNU4-41P-201ENST00000364426 143 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 MIR513A1-201ENST00000385138 129 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 MIR16-1-201ENST00000385271 89 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AL356131.1-201ENST00000405826 414 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 CALM1P1-201ENST00000442082 433 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC087343.1-201ENST00000477341 475 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC107032.1-201ENST00000485945 480 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 FABP5P5-201ENST00000515537 406 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 AL133241.1-201ENST00000556832 487 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 CYCSP2-201ENST00000558168 301 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AP003400.5-201ENST00000624827 617 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
CHD3Q12873 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD3Q12873 U6atac.2-201ENST00000408644 118 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC096649.2-201ENST00000416186 393 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 BPY2DP-201ENST00000422208 265 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 PSMA6P3-201ENST00000428242 164 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC093422.3-201ENST00000428506 305 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD3Q12873 NDUFA5P7-201ENST00000452914 242 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD3Q12873 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.13□□□□□ -2.23
CHD3Q12873 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.13□□□□□ -2.23
CHD3Q12873 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD3Q12873 AL022067.1-201ENST00000602426 454 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC133794.1-201ENST00000602731 914 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 AC006213.5-201ENST00000619673 288 ntBASIC1.13□□□□□ -2.23
CHD3Q12873 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD3Q12873 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD3Q12873 RNU6-481P-201ENST00000384194 107 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 MIR95-201ENST00000385072 81 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
CHD3Q12873 MIR1290-201ENST00000408735 78 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.12□□□□□ -2.23
CHD3Q12873 RPS6P15-201ENST00000431996 751 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.12□□□□□ -2.23
CHD3Q12873 RNU7-59P-201ENST00000459101 61 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.12□□□□□ -2.23
CHD3Q12873 AC008834.1-201ENST00000511612 175 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 SMURF2P1-201ENST00000514992 481 ntBASIC1.12□□□□□ -2.23
CHD3Q12873 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC1.12□□□□□ -2.23
CHD3Q12873 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.12□□□□□ -2.23
CHD3Q12873 AC093519.1-201ENST00000566109 298 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms