Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL590705.4-201ENST00000532209 134 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AC005476.1-201ENST00000554427 397 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AC023575.1-201ENST00000580510 358 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AC091178.1-203ENST00000584586 279 ntBASIC4.19□□□□□ -1.74
RNF4P78317 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.19□□□□□ -1.74
RNF4P78317 AC005046.1-201ENST00000608515 625 ntBASIC4.19□□□□□ -1.74
RNF4P78317 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 U6.104-201ENST00000637979 90 ntBASIC4.19□□□□□ -1.74
RNF4P78317 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 MTND5P6-201ENST00000422338 1798 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 RLIMP1-201ENST00000339626 1680 ntBASIC4.19□□□□□ -1.74
RNF4P78317 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
RNF4P78317 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.18□□□□□ -1.74
RNF4P78317 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
RNF4P78317 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
RNF4P78317 AC025031.4-201ENST00000621248 3271 ntBASIC4.18□□□□□ -1.74
RNF4P78317 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
RNF4P78317 MIR921-201ENST00000401133 56 ntBASIC4.18□□□□□ -1.74
RNF4P78317 AC098614.2-201ENST00000426040 255 ntBASIC4.18□□□□□ -1.74
RNF4P78317 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.18□□□□□ -1.74
RNF4P78317 AL451050.1-201ENST00000450126 415 ntBASIC4.18□□□□□ -1.74
RNF4P78317 AC012671.1-201ENST00000451912 203 ntBASIC4.18□□□□□ -1.74
RNF4P78317 AC108751.2-201ENST00000469993 231 ntBASIC4.18□□□□□ -1.74
RNF4P78317 RPL21P126-201ENST00000470049 478 ntBASIC4.18□□□□□ -1.74
RNF4P78317 RNU6-911P-201ENST00000516523 104 ntBASIC4.18□□□□□ -1.74
RNF4P78317 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.18□□□□□ -1.74
RNF4P78317 BPIFA4P-203ENST00000603168 689 ntBASIC4.18□□□□□ -1.74
RNF4P78317 AC073410.2-201ENST00000603240 332 ntBASIC4.18□□□□□ -1.74
RNF4P78317 RNF138P2-201ENST00000603490 592 ntBASIC4.18□□□□□ -1.74
RNF4P78317 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.18□□□□□ -1.74
RNF4P78317 AC099506.2-201ENST00000623074 221 ntBASIC4.18□□□□□ -1.74
RNF4P78317 U6.99-201ENST00000637524 83 ntBASIC4.18□□□□□ -1.74
RNF4P78317 MFSD8-242ENST00000641690 4199 ntBASIC4.18□□□□□ -1.74
RNF4P78317 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
RNF4P78317 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
RNF4P78317 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
RNF4P78317 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.18□□□□□ -1.74
RNF4P78317 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.18□□□□□ -1.74
RNF4P78317 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
RNF4P78317 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.17□□□□□ -1.74
RNF4P78317 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
RNF4P78317 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
RNF4P78317 AC007785.2-201ENST00000598627 1916 ntBASIC4.17□□□□□ -1.74
RNF4P78317 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF4P78317 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF4P78317 RNU6-227P-201ENST00000362865 103 ntBASIC4.17□□□□□ -1.74
RNF4P78317 RNU6-78P-201ENST00000362897 107 ntBASIC4.17□□□□□ -1.74
RNF4P78317 RNU1-76P-201ENST00000362903 159 ntBASIC4.17□□□□□ -1.74
RNF4P78317 RNA5SP447-201ENST00000363749 119 ntBASIC4.17□□□□□ -1.74
RNF4P78317 RNU6-121P-201ENST00000410525 99 ntBASIC4.17□□□□□ -1.74
RNF4P78317 ELOCP19-201ENST00000411919 318 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.17□□□□□ -1.74
RNF4P78317 RPL21P66-201ENST00000426566 466 ntBASIC4.17□□□□□ -1.74
RNF4P78317 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 RPL23AP25-201ENST00000430973 463 ntBASIC4.17□□□□□ -1.74
RNF4P78317 SNRPEP9-201ENST00000436794 238 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC009237.8-201ENST00000445492 379 ntBASIC4.17□□□□□ -1.74
RNF4P78317 MTND4LP30-201ENST00000454092 297 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.17□□□□□ -1.74
RNF4P78317 RNU7-87P-201ENST00000459343 62 ntBASIC4.17□□□□□ -1.74
RNF4P78317 RPL39P38-201ENST00000467018 153 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC034236.1-201ENST00000469891 373 ntBASIC4.17□□□□□ -1.74
RNF4P78317 TRBVB-201ENST00000477100 408 ntBASIC4.17□□□□□ -1.74
RNF4P78317 HMGB1P35-201ENST00000503360 598 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC074250.1-201ENST00000511117 192 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC015795.1-201ENST00000513669 327 ntBASIC4.17□□□□□ -1.74
RNF4P78317 Y_RNA.673-201ENST00000516306 88 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.17□□□□□ -1.74
RNF4P78317 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.17□□□□□ -1.74
RNF4P78317 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF4P78317 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.17□□□□□ -1.74
RNF4P78317 AC007375.1-201ENST00000554513 578 ntBASIC4.17□□□□□ -1.74
RNF4P78317 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 AC005255.1-201ENST00000593748 216 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC136601.2-201ENST00000604356 474 ntBASIC4.17□□□□□ -1.74
RNF4P78317 AC015813.4-201ENST00000610469 179 ntBASIC4.17□□□□□ -1.74
RNF4P78317 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.17□□□□□ -1.74
RNF4P78317 SDR42E1P4-201ENST00000620894 481 ntBASIC4.17□□□□□ -1.74
RNF4P78317 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 AC008568.2-201ENST00000623862 2313 ntBASIC4.17□□□□□ -1.74
RNF4P78317 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 Z75746.1-201ENST00000440243 2080 ntBASIC4.17□□□□□ -1.74
RNF4P78317 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 AP001148.1-201ENST00000624124 2359 ntBASIC4.17□□□□□ -1.74
RNF4P78317 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
RNF4P78317 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF4P78317 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF4P78317 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.16□□□□□ -1.74
RNF4P78317 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
RNF4P78317 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.16□□□□□ -1.74
RNF4P78317 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms