Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL360219.1-201ENST00000610230 366 ntBASIC3.06□□□□□ -1.92
BDNFP23560 U4atac.1-201ENST00000618345 95 ntBASIC3.06□□□□□ -1.92
BDNFP23560 MIR5739-201ENST00000619803 80 ntBASIC3.06□□□□□ -1.92
BDNFP23560 AC024581.2-201ENST00000619986 252 ntBASIC3.06□□□□□ -1.92
BDNFP23560 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
BDNFP23560 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.06□□□□□ -1.92
BDNFP23560 AC092656.1-203ENST00000624134 423 ntBASIC3.06□□□□□ -1.92
BDNFP23560 AC138627.2-201ENST00000624202 601 ntBASIC3.06□□□□□ -1.92
BDNFP23560 AP006437.1-201ENST00000641440 3685 ntBASIC3.06□□□□□ -1.92
BDNFP23560 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
BDNFP23560 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.06□□□□□ -1.92
BDNFP23560 AC093010.3-201ENST00000570269 15214 ntBASIC3.05□□□□□ -1.92
BDNFP23560 RNU6-641P-201ENST00000384006 107 ntBASIC3.05□□□□□ -1.92
BDNFP23560 RNU1-52P-201ENST00000384190 164 ntBASIC3.05□□□□□ -1.92
BDNFP23560 RNU6-166P-201ENST00000384371 107 ntBASIC3.05□□□□□ -1.92
BDNFP23560 MIR558-201ENST00000384920 94 ntBASIC3.05□□□□□ -1.92
BDNFP23560 RPS3AP36-201ENST00000398190 775 ntBASIC3.05□□□□□ -1.92
BDNFP23560 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AC092809.3-201ENST00000415453 231 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AC003685.2-201ENST00000422795 395 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.05□□□□□ -1.92
BDNFP23560 UBE2D3P1-201ENST00000436669 444 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AL353706.1-201ENST00000436728 494 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AP000852.1-201ENST00000472460 573 ntBASIC3.05□□□□□ -1.92
BDNFP23560 MTAPP1-201ENST00000489154 819 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.05□□□□□ -1.92
BDNFP23560 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.05□□□□□ -1.92
BDNFP23560 HIGD1AP13-201ENST00000509878 289 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.05□□□□□ -1.92
BDNFP23560 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.05□□□□□ -1.92
BDNFP23560 AC027176.1-201ENST00000560204 514 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AC012213.3-201ENST00000577199 777 ntBASIC3.05□□□□□ -1.92
BDNFP23560 AL603755.1-201ENST00000619504 163 ntBASIC3.05□□□□□ -1.92
BDNFP23560 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
BDNFP23560 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.04□□□□□ -1.92
BDNFP23560 AC103710.2-202ENST00000641454 2853 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AL139095.1-201ENST00000404326 391 ntBASIC3.04□□□□□ -1.92
BDNFP23560 NPM1P11-201ENST00000417106 855 ntBASIC3.04□□□□□ -1.92
BDNFP23560 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.04□□□□□ -1.92
BDNFP23560 EIF4EP4-201ENST00000424916 578 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AC244505.4-201ENST00000434905 287 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AC004383.1-201ENST00000438135 289 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.04□□□□□ -1.92
BDNFP23560 SSXP5-201ENST00000443473 287 ntBASIC3.04□□□□□ -1.92
BDNFP23560 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
BDNFP23560 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.04□□□□□ -1.92
BDNFP23560 KATNBL1P6-201ENST00000453433 915 ntBASIC3.04□□□□□ -1.92
BDNFP23560 snoU109.1-201ENST00000459339 135 ntBASIC3.04□□□□□ -1.92
BDNFP23560 MRPL42P6-201ENST00000486397 371 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AC109486.1-201ENST00000486833 374 ntBASIC3.04□□□□□ -1.92
BDNFP23560 RPL37P25-201ENST00000507308 276 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AC108078.2-201ENST00000510750 236 ntBASIC3.04□□□□□ -1.92
BDNFP23560 RNA5SP367-201ENST00000516557 118 ntBASIC3.04□□□□□ -1.92
BDNFP23560 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.04□□□□□ -1.92
BDNFP23560 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.04□□□□□ -1.92
BDNFP23560 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.04□□□□□ -1.92
BDNFP23560 HMGN1P30-201ENST00000589286 268 ntBASIC3.04□□□□□ -1.92
BDNFP23560 WISP1-OT1-201ENST00000602893 642 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AL451064.1-201ENST00000607718 471 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AC012409.4-201ENST00000612923 249 ntBASIC3.04□□□□□ -1.92
BDNFP23560 AC091304.6-201ENST00000619761 202 ntBASIC3.04□□□□□ -1.92
BDNFP23560 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.04□□□□□ -1.92
BDNFP23560 AC096644.4-201ENST00000563417 2912 ntBASIC3.04□□□□□ -1.92
BDNFP23560 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.04□□□□□ -1.92
BDNFP23560 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
BDNFP23560 RNU5E-1-201ENST00000362477 120 ntBASIC3.03□□□□□ -1.92
BDNFP23560 Y_RNA.111-201ENST00000363248 100 ntBASIC3.03□□□□□ -1.92
BDNFP23560 RNU4-1-201ENST00000363925 141 ntBASIC3.03□□□□□ -1.92
BDNFP23560 RNU1-100P-201ENST00000365255 165 ntBASIC3.03□□□□□ -1.92
BDNFP23560 SNORA20.2-201ENST00000383922 131 ntBASIC3.03□□□□□ -1.92
BDNFP23560 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.03□□□□□ -1.92
BDNFP23560 TOMM20P4-201ENST00000427861 435 ntBASIC3.03□□□□□ -1.92
BDNFP23560 CALM2P2-201ENST00000428512 440 ntBASIC3.03□□□□□ -1.92
BDNFP23560 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.03□□□□□ -1.92
BDNFP23560 AL627311.1-201ENST00000431514 115 ntBASIC3.03□□□□□ -1.92
BDNFP23560 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.03□□□□□ -1.92
BDNFP23560 EPS15P1-201ENST00000448836 336 ntBASIC3.03□□□□□ -1.92
BDNFP23560 NDUFB1P2-201ENST00000449477 176 ntBASIC3.03□□□□□ -1.92
BDNFP23560 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.03□□□□□ -1.92
BDNFP23560 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.03□□□□□ -1.92
BDNFP23560 RN7SKP43-201ENST00000516173 320 ntBASIC3.03□□□□□ -1.92
BDNFP23560 AC079598.5-201ENST00000547460 117 ntBASIC3.03□□□□□ -1.92
BDNFP23560 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.03□□□□□ -1.92
BDNFP23560 MIR548AC-201ENST00000585049 88 ntBASIC3.03□□□□□ -1.92
BDNFP23560 AC087683.2-201ENST00000611384 326 ntBASIC3.03□□□□□ -1.92
BDNFP23560 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.03□□□□□ -1.92
BDNFP23560 AP003400.5-201ENST00000624827 617 ntBASIC3.03□□□□□ -1.92
BDNFP23560 SCARNA15.3-201ENST00000626315 122 ntBASIC3.03□□□□□ -1.92
BDNFP23560 SCARNA4.1-201ENST00000628597 123 ntBASIC3.03□□□□□ -1.92
BDNFP23560 MIR3529-201ENST00000637713 78 ntBASIC3.03□□□□□ -1.92
BDNFP23560 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.03□□□□□ -1.92
BDNFP23560 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
BDNFP23560 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
BDNFP23560 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
BDNFP23560 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.02□□□□□ -1.93
BDNFP23560 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
BDNFP23560 SNORA5B-201ENST00000363786 132 ntBASIC3.02□□□□□ -1.93
BDNFP23560 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.02□□□□□ -1.93
BDNFP23560 RNU1-138P-201ENST00000384093 164 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms