Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL9A1P20849 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
COL9A1P20849 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.45□□□□□ -1.54
COL9A1P20849 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
COL9A1P20849 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.45□□□□□ -1.54
COL9A1P20849 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.45□□□□□ -1.54
COL9A1P20849 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
COL9A1P20849 RNY1P11-201ENST00000363759 113 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 Y_RNA.294-201ENST00000364916 102 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 RNU6-597P-201ENST00000365620 102 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 MIR544A-201ENST00000384855 91 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 AC074117.2-201ENST00000417130 397 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC5.45□□□□□ -1.54
COL9A1P20849 AL158147.1-201ENST00000443970 75 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 AC140172.1-201ENST00000502928 141 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 RN7SKP83-201ENST00000516512 178 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 AC006199.1-201ENST00000548728 219 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 CR383656.8-201ENST00000549046 145 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 AC133485.4-201ENST00000561835 220 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 AC138907.4-201ENST00000570107 226 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 MIR4691-201ENST00000583764 85 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.45□□□□□ -1.54
COL9A1P20849 TEX41-243ENST00000614173 190 ntTSL 5 BASIC5.45□□□□□ -1.54
COL9A1P20849 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL9A1P20849 AL591135.1-201ENST00000401578 5914 ntBASIC5.45□□□□□ -1.54
COL9A1P20849 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.45□□□□□ -1.54
COL9A1P20849 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL9A1P20849 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.44□□□□□ -1.54
COL9A1P20849 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC5.44□□□□□ -1.54
COL9A1P20849 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 AC104964.3-201ENST00000606115 2860 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 AC118273.1-201ENST00000525324 3006 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 Y_RNA.35-201ENST00000362601 101 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 RNU6-1205P-201ENST00000363625 106 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 Y_RNA.280-201ENST00000364765 112 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 SNORA12.1-201ENST00000390873 148 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 SNORA26.3-201ENST00000391119 136 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 MIR298-201ENST00000401212 88 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 AL592291.1-201ENST00000403830 352 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 RN7SKP100-201ENST00000411258 284 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC5.44□□□□□ -1.54
COL9A1P20849 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.44□□□□□ -1.54
COL9A1P20849 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 AC053481.4-201ENST00000583164 216 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 AL359198.2-201ENST00000611836 194 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 AC090132.2-201ENST00000615881 347 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 UGP2-230ENST00000626380 276 ntTSL 5 BASIC5.44□□□□□ -1.54
COL9A1P20849 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.44□□□□□ -1.54
COL9A1P20849 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
COL9A1P20849 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 AL137141.1-201ENST00000624622 4836 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.44□□□□□ -1.54
COL9A1P20849 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL9A1P20849 AC090971.4-201ENST00000560291 1800 ntBASIC5.44□□□□□ -1.54
COL9A1P20849 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
COL9A1P20849 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
COL9A1P20849 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.43□□□□□ -1.54
COL9A1P20849 OR4F13P-202ENST00000560066 2054 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
COL9A1P20849 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.43□□□□□ -1.54
COL9A1P20849 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL9A1P20849 Y_RNA.229-201ENST00000364347 113 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 Y_RNA.368-201ENST00000365547 113 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 Z98749.2-208ENST00000381646 500 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 MT-TT-201ENST00000387460 66 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 RPL11P3-201ENST00000395256 523 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 RPL21P17-201ENST00000397467 475 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 RPL27AP8-201ENST00000424277 446 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 AL732292.1-201ENST00000426692 226 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.43□□□□□ -1.54
COL9A1P20849 AL161713.1-201ENST00000555538 145 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 AC136601.2-201ENST00000604356 474 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 AL136164.4-201ENST00000625013 2135 ntBASIC5.43□□□□□ -1.54
COL9A1P20849 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.43□□□□□ -1.54
COL9A1P20849 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL9A1P20849 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.43□□□□□ -1.54
COL9A1P20849 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.42□□□□□ -1.54
COL9A1P20849 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms