Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CPSF3Q9UKF6 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC062016.1-201ENST00000355719 319 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 RNU4-40P-201ENST00000364351 143 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 Y_RNA.510-201ENST00000384511 114 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 MIR634-201ENST00000385208 97 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 FO393413.1-201ENST00000402892 195 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 CDK8P2-201ENST00000415020 547 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AL365338.1-201ENST00000422282 858 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 RPL7P37-201ENST00000425095 738 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 ISCA1P1-201ENST00000426679 387 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 HMGB1P27-201ENST00000431429 603 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 UBBP3-201ENST00000445497 241 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 WASF1P1-201ENST00000447560 1131 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC108938.1-201ENST00000451204 136 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 MTCYBP1-201ENST00000454315 1119 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 RPL31P41-201ENST00000477967 372 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC126182.1-201ENST00000478134 357 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC105252.1-201ENST00000503089 286 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC090572.1-201ENST00000519251 160 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 OR5B19P-201ENST00000531766 928 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 HSPE1P20-201ENST00000538133 289 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC012213.3-201ENST00000577199 777 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 MIR4319-201ENST00000577285 85 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC004805.2-201ENST00000605382 482 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC245008.1-201ENST00000608123 476 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 UCA1.1-201ENST00000620952 75 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 AC007998.5-201ENST00000622938 237 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 MTND5P42-201ENST00000637720 498 ntBASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
CPSF3Q9UKF6 MTND5P29-201ENST00000458676 1807 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 SNORD56.5-201ENST00000364281 72 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 DEFB108C-201ENST00000400154 252 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AL356057.3-201ENST00000402607 340 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 RNU2-52P-201ENST00000410680 190 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC092809.3-201ENST00000415453 231 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 SNRPEP9-201ENST00000436794 238 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AL136380.1-201ENST00000447970 162 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC079448.1-201ENST00000449377 373 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 TPT1P7-201ENST00000458300 517 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 SNORD109B-201ENST00000458961 67 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 SNORD109A-201ENST00000459128 67 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AP002963.1-201ENST00000530590 184 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC087883.1-201ENST00000551882 391 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC010546.1-201ENST00000569391 485 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC104763.2-201ENST00000604179 382 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 AC109347.2-201ENST00000610220 349 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CPSF3Q9UKF6 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 RNY1P12-201ENST00000364251 105 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 MIR627-201ENST00000384979 97 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 MIR888-201ENST00000401186 77 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AL590004.2-201ENST00000404787 371 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 RPS12P24-201ENST00000412619 387 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 BTF3L4P1-201ENST00000413813 468 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 NUP35P1-201ENST00000422734 947 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AC063976.3-201ENST00000426849 329 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 MED13P1-201ENST00000428342 171 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 GPM6BP2-201ENST00000432046 144 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 GPM6BP1-201ENST00000446387 144 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 MTCO2P18-201ENST00000457151 658 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 AC114786.4-201ENST00000508771 728 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 RNU6-430P-201ENST00000517078 107 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 RNA5SP165-201ENST00000517142 115 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 MIR3611-201ENST00000584484 83 ntBASIC2.92□□□□□ -1.94
CPSF3Q9UKF6 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms