Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 FP236240.3-201ENST00000623061 327 ntBASIC3.87□□□□□ -1.79
DDX56Q9NY93 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.87□□□□□ -1.79
DDX56Q9NY93 MIR3662-201ENST00000637030 95 ntBASIC3.87□□□□□ -1.79
DDX56Q9NY93 AC024614.3-201ENST00000637860 256 ntBASIC3.87□□□□□ -1.79
DDX56Q9NY93 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
DDX56Q9NY93 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.87□□□□□ -1.79
DDX56Q9NY93 RPS4XP5-202ENST00000449995 1334 ntBASIC3.87□□□□□ -1.79
DDX56Q9NY93 CDC27P3-201ENST00000635418 1910 ntBASIC3.87□□□□□ -1.79
DDX56Q9NY93 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.87□□□□□ -1.79
DDX56Q9NY93 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
DDX56Q9NY93 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
DDX56Q9NY93 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
DDX56Q9NY93 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
DDX56Q9NY93 Y_RNA.324-201ENST00000365165 102 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 RNU4-20P-201ENST00000365601 151 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC068538.1-201ENST00000376856 336 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 MIR141-201ENST00000384975 95 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 RNA5SP219-201ENST00000390940 113 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC006989.1-201ENST00000427212 131 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 NDUFB1P1-201ENST00000435191 180 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC233279.1-201ENST00000455300 423 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 DYNLL1P5-201ENST00000467158 270 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC006483.1-201ENST00000487308 313 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 CCDC34P1-201ENST00000507441 517 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AP004607.1-201ENST00000524456 203 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC078814.3-201ENST00000553036 491 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 RNU6-89P-201ENST00000606519 100 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC005344.1-201ENST00000613391 459 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 AL732372.2-225ENST00000642124 456 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
DDX56Q9NY93 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.86□□□□□ -1.79
DDX56Q9NY93 AC010889.1-201ENST00000566193 2666 ntBASIC3.86□□□□□ -1.79
DDX56Q9NY93 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
DDX56Q9NY93 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
DDX56Q9NY93 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
DDX56Q9NY93 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 RNU6-384P-201ENST00000364900 104 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 RNA5SP283-201ENST00000365604 119 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 RNU2-3P-201ENST00000410144 191 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 RPLP0P7-201ENST00000416050 667 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 PGBD4P6-201ENST00000421501 610 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AL591419.1-201ENST00000427423 339 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 HIGD1AP2-201ENST00000446367 280 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 TPT1P12-201ENST00000448968 492 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 RNU6-1208P-201ENST00000459588 107 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC092747.3-201ENST00000603769 301 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AL035413.2-201ENST00000604801 525 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC083809.1-201ENST00000615051 472 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC103705.1-201ENST00000619013 241 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 UCA1.1-201ENST00000620952 75 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AC092628.2-201ENST00000622492 339 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 RNA5SP196-201ENST00000625967 102 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 AP000553.6-201ENST00000641242 118 ntBASIC3.85□□□□□ -1.79
DDX56Q9NY93 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
DDX56Q9NY93 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
DDX56Q9NY93 Y_RNA.157-201ENST00000363638 102 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 RNU6-283P-201ENST00000364788 107 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 RNU6-72P-201ENST00000384285 79 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 MIR518D-201ENST00000385014 87 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
DDX56Q9NY93 RNU6-628P-201ENST00000410675 107 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 CYCSP33-201ENST00000414485 327 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC009161.1-201ENST00000417306 376 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX56Q9NY93 SRIP2-201ENST00000428470 166 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 AC092001.1-201ENST00000453012 261 ntBASIC3.84□□□□□ -1.79
DDX56Q9NY93 RPL31P58-201ENST00000469001 379 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 204.4 ms