Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 TRMT10BP1-201ENST00000519377 943 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AP003072.1-201ENST00000531740 145 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC020914.4-201ENST00000597690 277 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC018462.2-201ENST00000605375 395 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AL080274.1-201ENST00000605565 220 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC019193.3-201ENST00000609144 554 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 FTX_3.1-201ENST00000610451 147 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 ZYXP1-201ENST00000617638 118 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AF117829.1-206ENST00000621883 3802 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 RNA5SP196-201ENST00000625967 102 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 AL133383.2-201ENST00000622958 2336 ntBASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM39Q9HCM9 MTCO1P12-201ENST00000414273 1543 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 RNU6-384P-201ENST00000364900 104 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 SNORD42.2-201ENST00000365570 69 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 RNU6-166P-201ENST00000384371 107 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 RNU6-933P-201ENST00000384424 107 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AL138878.1-201ENST00000405131 347 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 RNU6-1050P-201ENST00000410388 107 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 Z99755.1-201ENST00000414048 380 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 PGBD4P6-201ENST00000421501 610 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC097713.2-201ENST00000430199 356 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AL358472.1-201ENST00000431295 329 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 RPS15AP10-201ENST00000432472 382 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 OR4C10P-201ENST00000434991 931 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 HIGD1AP11-201ENST00000438361 280 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 PCMTD1P1-201ENST00000455560 355 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 Y_RNA.631-201ENST00000459607 101 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 RN7SL585P-201ENST00000470538 280 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AL135752.1-201ENST00000479477 471 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC108043.1-201ENST00000512696 574 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 IFITM8P-201ENST00000522529 394 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 HMGB1P14-201ENST00000557424 591 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 MIR4644-201ENST00000579929 84 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AL160281.1-201ENST00000605307 311 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC068724.3-201ENST00000625906 87 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 AC018555.1-201ENST00000567548 1980 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 Z82217.1-201ENST00000625157 8149 ntBASIC4.05□□□□□ -1.76
TRIM39Q9HCM9 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SPRR2C-201ENST00000290702 219 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 MIR369-201ENST00000362155 70 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 Y_RNA.326-201ENST00000365176 113 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 Y_RNA.445-201ENST00000384168 102 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SNORA1.3-201ENST00000384676 136 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SNORD73A-201ENST00000386062 65 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AL591034.1-201ENST00000407447 340 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 HSPE1P12-201ENST00000412576 301 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 RPL26P27-201ENST00000414397 437 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 MRPS31P2-201ENST00000451581 518 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 HMGB3P22-202ENST00000451823 572 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 RPL12P25-201ENST00000455592 494 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC018437.1-201ENST00000492214 406 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 RPL29P14-201ENST00000495837 428 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 SCARNA15.1-201ENST00000516384 125 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 RNU7-143P-201ENST00000516781 65 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC109479.2-201ENST00000517842 174 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC011602.1-201ENST00000546484 331 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AC008121.1-201ENST00000603244 268 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AP000654.2-201ENST00000605633 586 ntBASIC4.04□□□□□ -1.76
TRIM39Q9HCM9 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms