Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC005336.3-201ENST00000623833 2679 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 RNY4P24-201ENST00000362735 96 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 RNU4-21P-201ENST00000362802 126 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 RNU1-73P-201ENST00000383971 164 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 SNORA75B-201ENST00000384053 137 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 RNU6-39P-201ENST00000384344 107 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 Y_RNA.534-201ENST00000384599 112 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 MIR34A-201ENST00000385130 110 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AL031577.2-201ENST00000404133 280 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 ELOCP17-201ENST00000414751 326 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AL589872.1-201ENST00000426602 288 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 WARS2P1-201ENST00000429678 537 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AL592045.1-201ENST00000429867 352 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 ARL5AP4-201ENST00000430731 512 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 TAF9P1-201ENST00000445421 515 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 TAF9P2-201ENST00000454958 515 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 RNU1-103P-201ENST00000516502 125 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 DUXAP5-201ENST00000529668 529 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC007938.3-201ENST00000604965 623 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 OR2AS2P-201ENST00000606902 342 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC091304.9-201ENST00000612091 226 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC090970.3-201ENST00000612566 866 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AL589743.7-201ENST00000612637 233 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC005332.10-201ENST00000612725 619 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC008498.1-201ENST00000613012 531 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AL392048.1-201ENST00000613946 534 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 AC012640.5-201ENST00000623897 319 ntBASIC2.09□□□□□ -2.07
CCDC54Q8NEL0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC54Q8NEL0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.09□□□□□ -2.08
CCDC54Q8NEL0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC54Q8NEL0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
CCDC54Q8NEL0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.09□□□□□ -2.08
CCDC54Q8NEL0 MTND5P29-201ENST00000458676 1807 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 MIRLET7G-201ENST00000362280 84 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 RNU5E-1-201ENST00000362477 120 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 RNU6-288P-201ENST00000363690 104 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 RNU5E-5P-201ENST00000365379 116 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 IPO7P1-201ENST00000442031 636 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 NEFMP1-201ENST00000443423 1006 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 RPL26P9-201ENST00000457466 433 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 SNORA31.6-201ENST00000516241 130 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 RNA5SP291-201ENST00000517222 105 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 GTF3AP2-201ENST00000557014 266 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 BNIP3P33-201ENST00000598912 569 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AL451064.1-201ENST00000607718 471 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC025594.3-201ENST00000613068 790 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC079416.3-201ENST00000624479 549 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 AC010149.2-201ENST00000637608 315 ntBASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC54Q8NEL0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL365361.1-201ENST00000566942 3481 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 Y_RNA.169-201ENST00000363745 96 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RN7SKP226-201ENST00000364912 300 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 SNORA4.3-201ENST00000365564 137 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RNU6-278P-201ENST00000390945 109 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL355497.1-201ENST00000406262 551 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RNA5SP184-201ENST00000411071 108 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 OR51A5P-201ENST00000415429 942 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL031779.1-201ENST00000415663 330 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RPS15AP12-201ENST00000419498 388 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 Z99497.1-201ENST00000421282 135 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 CYCSP46-201ENST00000423569 204 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL031667.1-201ENST00000440222 725 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL022238.1-201ENST00000442557 355 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL031659.1-201ENST00000447075 539 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 SSXP1-201ENST00000453640 473 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 MTND1P12-201ENST00000455231 147 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms