Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 Y_RNA.674-201ENST00000516362 113 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.59□□□□□ -1.67
SOX4Q06945 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
SOX4Q06945 AC093023.1-201ENST00000547375 507 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX4Q06945 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SOX4Q06945 AC136932.1-201ENST00000574771 208 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 MIR4300-201ENST00000581016 96 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX4Q06945 AC067852.4-201ENST00000590314 478 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AC006077.1-201ENST00000604746 343 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AC004852.3-201ENST00000614131 326 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 U73479.1-201ENST00000618062 168 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX4Q06945 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX4Q06945 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX4Q06945 BMS1P21-201ENST00000634565 365 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 AL592182.3-201ENST00000642132 3304 ntBASIC4.59□□□□□ -1.67
SOX4Q06945 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
SOX4Q06945 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
SOX4Q06945 AC126323.6-202ENST00000568092 3511 ntBASIC4.59□□□□□ -1.68
SOX4Q06945 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.59□□□□□ -1.68
SOX4Q06945 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.59□□□□□ -1.68
SOX4Q06945 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX4Q06945 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX4Q06945 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 Y_RNA.16-201ENST00000362421 102 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 Y_RNA.83-201ENST00000363005 113 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 RNU6-512P-201ENST00000364438 103 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 RNU6-827P-201ENST00000365553 106 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 RNU6-378P-201ENST00000384324 107 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 SNORA70E-201ENST00000384492 135 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 RPS29P13-201ENST00000402041 169 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 AC091286.1-201ENST00000431233 461 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 RPL26P6-201ENST00000440913 438 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX4Q06945 RPL23AP81-201ENST00000455252 467 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AL136097.1-201ENST00000456945 913 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SOX4Q06945 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
SOX4Q06945 AL359273.1-201ENST00000510918 627 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.58□□□□□ -1.68
SOX4Q06945 AC099522.1-202ENST00000514718 367 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 Y_RNA.703-201ENST00000516846 111 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AL442163.3-201ENST00000554110 156 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AL157871.3-201ENST00000557231 293 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 AC098826.3-201ENST00000603823 466 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AP000787.2-201ENST00000604432 568 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 MIR6867-201ENST00000610636 67 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 AC140113.4-201ENST00000622087 222 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX4Q06945 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 LINC02555-201ENST00000563933 1951 ntBASIC4.58□□□□□ -1.68
SOX4Q06945 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX4Q06945 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.58□□□□□ -1.68
SOX4Q06945 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SOX4Q06945 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX4Q06945 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.57□□□□□ -1.68
SOX4Q06945 MAPK10-286ENST00000641208 8747 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SOX4Q06945 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX4Q06945 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX4Q06945 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX4Q06945 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SOX4Q06945 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX4Q06945 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX4Q06945 MIR372-201ENST00000362225 67 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 Y_RNA.33-201ENST00000362591 102 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 SNORD50.1-201ENST00000362987 71 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 RNU6-395P-201ENST00000365662 106 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 MIR195-201ENST00000385194 87 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 SNORD56-201ENST00000413522 71 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AL356095.1-201ENST00000417217 199 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX4Q06945 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX4Q06945 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.57□□□□□ -1.68
SOX4Q06945 RPL29P29-201ENST00000448725 423 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.57□□□□□ -1.68
SOX4Q06945 AC087588.1-201ENST00000462203 316 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AC108022.1-201ENST00000493466 478 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AC104164.2-201ENST00000496953 495 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX4Q06945 AC026402.1-201ENST00000513642 170 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms