Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.46□□□□□ -2.34
PRKDCP78527 AC096745.1-201ENST00000509945 370 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC0.46□□□□□ -2.34
PRKDCP78527 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC0.46□□□□□ -2.34
PRKDCP78527 MIR5571-201ENST00000577998 113 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 AC011260.1-201ENST00000578420 472 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 AL627230.6-201ENST00000611129 280 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 AL137003.2-201ENST00000606924 2538 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 MIR26B-201ENST00000362251 77 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 SNORD95.1-201ENST00000364099 68 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 MIR508-201ENST00000384857 115 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 SFR1P1-201ENST00000403720 688 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.46□□□□□ -2.34
PRKDCP78527 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.46□□□□□ -2.34
PRKDCP78527 AP001330.4-201ENST00000604350 154 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 AC135507.1-201ENST00000607214 561 ntBASIC0.46□□□□□ -2.34
PRKDCP78527 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.46□□□□□ -2.34
PRKDCP78527 RNU1-23P-201ENST00000363361 144 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 RNA5SP391-201ENST00000363456 119 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 AL645638.1-201ENST00000440519 361 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AL161651.1-201ENST00000440882 223 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.45□□□□□ -2.34
PRKDCP78527 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 AC004062.1-201ENST00000509926 645 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.45□□□□□ -2.34
PRKDCP78527 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.45□□□□□ -2.34
PRKDCP78527 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.45□□□□□ -2.34
PRKDCP78527 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.45□□□□□ -2.34
PRKDCP78527 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.45□□□□□ -2.34
PRKDCP78527 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC0.45□□□□□ -2.34
PRKDCP78527 AC092648.1-201ENST00000425870 423 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 AC022690.1-201ENST00000526681 550 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AC004812.1-201ENST00000540773 146 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 RPL21P136-201ENST00000605378 396 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AL355802.3-201ENST00000607571 545 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.45□□□□□ -2.34
PRKDCP78527 ZNF702P-202ENST00000434269 1966 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 RNU6-251P-201ENST00000363235 104 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 SNORD114-15-201ENST00000364687 72 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 RNU6-1197P-201ENST00000391183 107 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AC079448.1-201ENST00000449377 373 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.45□□□□□ -2.34
PRKDCP78527 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PRKDCP78527 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 Y_RNA.324-201ENST00000365165 102 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 RNU6-43P-201ENST00000384302 107 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AC009296.1-201ENST00000443146 155 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC0.45□□□□□ -2.34
PRKDCP78527 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.45□□□□□ -2.34
PRKDCP78527 RNU6-496P-201ENST00000516145 99 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 MIR892C-201ENST00000516410 77 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 CYP4A27P-201ENST00000567218 190 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.45□□□□□ -2.34
PRKDCP78527 AP001269.3-201ENST00000588718 329 ntBASIC0.45□□□□□ -2.34
PRKDCP78527 RNU6-272P-201ENST00000411028 104 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC0.44□□□□□ -2.34
PRKDCP78527 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.44□□□□□ -2.34
PRKDCP78527 AP003327.1-201ENST00000529684 127 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.44□□□□□ -2.34
PRKDCP78527 RRN3P3-201ENST00000549207 578 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.44□□□□□ -2.34
PRKDCP78527 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.44□□□□□ -2.34
PRKDCP78527 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.44□□□□□ -2.34
PRKDCP78527 AL136372.1-201ENST00000403060 228 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 Z99497.1-201ENST00000421282 135 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.44□□□□□ -2.34
PRKDCP78527 AC004383.1-201ENST00000438135 289 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.44□□□□□ -2.34
PRKDCP78527 RPL39P28-201ENST00000465655 155 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AC111193.1-201ENST00000504097 155 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AP001485.1-201ENST00000604799 199 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AC095031.1-201ENST00000623685 672 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 OR5H6-203ENST00000642105 978 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.44□□□□□ -2.34
PRKDCP78527 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC0.44□□□□□ -2.34
PRKDCP78527 snoU109.1-201ENST00000459339 135 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.44□□□□□ -2.34
PRKDCP78527 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
PRKDCP78527 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC0.44□□□□□ -2.34
PRKDCP78527 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.44□□□□□ -2.34
PRKDCP78527 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.44□□□□□ -2.34
PRKDCP78527 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.44□□□□□ -2.34
PRKDCP78527 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC0.44□□□□□ -2.34
PRKDCP78527 AP003476.1-201ENST00000623984 516 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 AC245060.5-201ENST00000610778 3293 ntBASIC0.44□□□□□ -2.34
PRKDCP78527 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
PRKDCP78527 SNORA25.8-201ENST00000364831 128 ntBASIC0.43□□□□□ -2.34
PRKDCP78527 AL022718.1-201ENST00000412004 84 ntBASIC0.43□□□□□ -2.34
PRKDCP78527 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms