Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX3P41225 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SOX3P41225 API5P2-201ENST00000397055 1498 ntBASIC2.71□□□□□ -1.98
SOX3P41225 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX3P41225 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX3P41225 AC022336.2-201ENST00000568966 2538 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
SOX3P41225 RNU6-217P-201ENST00000384164 104 ntBASIC2.7□□□□□ -1.98
SOX3P41225 Y_RNA.516-201ENST00000384541 124 ntBASIC2.7□□□□□ -1.98
SOX3P41225 U3.26-201ENST00000391236 204 ntBASIC2.7□□□□□ -1.98
SOX3P41225 MTCO3P40-201ENST00000392516 676 ntBASIC2.7□□□□□ -1.98
SOX3P41225 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
SOX3P41225 RPS4XP8-201ENST00000402039 771 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AL122016.1-201ENST00000403365 367 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AL590004.2-201ENST00000404787 371 ntBASIC2.7□□□□□ -1.98
SOX3P41225 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX3P41225 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.7□□□□□ -1.98
SOX3P41225 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.7□□□□□ -1.98
SOX3P41225 AL109913.1-201ENST00000421173 514 ntBASIC2.7□□□□□ -1.98
SOX3P41225 ISCA1P1-201ENST00000426679 387 ntBASIC2.7□□□□□ -1.98
SOX3P41225 ELOCP14-201ENST00000428070 331 ntBASIC2.7□□□□□ -1.98
SOX3P41225 RPS29P6-201ENST00000438196 145 ntBASIC2.7□□□□□ -1.98
SOX3P41225 ELOCP7-201ENST00000439968 331 ntBASIC2.7□□□□□ -1.98
SOX3P41225 MTND4P25-201ENST00000441039 533 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX3P41225 RPL23AP20-201ENST00000447965 421 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC093392.2-201ENST00000450682 337 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AP001486.1-201ENST00000463339 476 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC097462.2-201ENST00000504623 481 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC006445.2-201ENST00000510061 472 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC108078.2-201ENST00000510750 236 ntBASIC2.7□□□□□ -1.98
SOX3P41225 Y_RNA.689-201ENST00000516589 107 ntBASIC2.7□□□□□ -1.98
SOX3P41225 RNU6-677P-201ENST00000516914 101 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX3P41225 AP003033.1-201ENST00000527244 415 ntBASIC2.7□□□□□ -1.98
SOX3P41225 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.7□□□□□ -1.98
SOX3P41225 AMZ2P1-203ENST00000565833 850 ntBASIC2.7□□□□□ -1.98
SOX3P41225 MIR4775-201ENST00000581168 75 ntBASIC2.7□□□□□ -1.98
SOX3P41225 MIR3609-201ENST00000582661 80 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AC006504.3-201ENST00000586818 523 ntBASIC2.7□□□□□ -1.98
SOX3P41225 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.7□□□□□ -1.98
SOX3P41225 AL020991.1-201ENST00000612314 373 ntBASIC2.7□□□□□ -1.98
SOX3P41225 AP001486.3-201ENST00000615334 372 ntBASIC2.7□□□□□ -1.98
SOX3P41225 FAM35CP-201ENST00000554755 2470 ntBASIC2.7□□□□□ -1.98
SOX3P41225 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX3P41225 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX3P41225 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.7□□□□□ -1.98
SOX3P41225 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
SOX3P41225 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.69□□□□□ -1.98
SOX3P41225 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
SOX3P41225 FAM35BP-202ENST00000497389 3337 ntBASIC2.69□□□□□ -1.98
SOX3P41225 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.69□□□□□ -1.98
SOX3P41225 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.69□□□□□ -1.98
SOX3P41225 RNU6-179P-201ENST00000363350 107 ntBASIC2.69□□□□□ -1.98
SOX3P41225 RNU6-512P-201ENST00000364438 103 ntBASIC2.69□□□□□ -1.98
SOX3P41225 Y_RNA.245-201ENST00000364493 95 ntBASIC2.69□□□□□ -1.98
SOX3P41225 SNORA9.2-201ENST00000365361 133 ntBASIC2.69□□□□□ -1.98
SOX3P41225 RNU4-48P-201ENST00000365559 182 ntBASIC2.69□□□□□ -1.98
SOX3P41225 RNU6-606P-201ENST00000384721 111 ntBASIC2.69□□□□□ -1.98
SOX3P41225 SAR1AP2-201ENST00000392696 594 ntBASIC2.69□□□□□ -1.98
SOX3P41225 SNORD88.1-201ENST00000408684 91 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AF274854.1-201ENST00000413236 615 ntBASIC2.69□□□□□ -1.98
SOX3P41225 OR51A5P-201ENST00000415429 942 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SOX3P41225 AL353193.1-201ENST00000421444 268 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.69□□□□□ -1.98
SOX3P41225 AC107083.1-201ENST00000439643 279 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.69□□□□□ -1.98
SOX3P41225 DDX3P2-201ENST00000446138 111 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC093899.1-201ENST00000457984 376 ntBASIC2.69□□□□□ -1.98
SOX3P41225 MRPS17P3-201ENST00000465453 385 ntBASIC2.69□□□□□ -1.98
SOX3P41225 HMGN2P13-201ENST00000476476 274 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AL049873.1-201ENST00000480540 376 ntBASIC2.69□□□□□ -1.98
SOX3P41225 RPL30P14-201ENST00000482744 348 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC096576.1-201ENST00000489014 359 ntBASIC2.69□□□□□ -1.98
SOX3P41225 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.69□□□□□ -1.98
SOX3P41225 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX3P41225 RNA5SP290-201ENST00000517133 127 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX3P41225 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.69□□□□□ -1.98
SOX3P41225 AP001893.2-201ENST00000526949 202 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX3P41225 OR5BN1P-201ENST00000532955 829 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC016957.1-201ENST00000534895 309 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC107016.2-201ENST00000547968 190 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.69□□□□□ -1.98
SOX3P41225 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX3P41225 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX3P41225 HMGB1P6-201ENST00000569046 646 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC012507.3-201ENST00000603556 477 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AL033523.1-201ENST00000605153 153 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC022893.3-201ENST00000607665 437 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC107294.1-201ENST00000609524 467 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AL359880.1-201ENST00000621879 266 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AC025034.2-201ENST00000623264 286 ntBASIC2.69□□□□□ -1.98
SOX3P41225 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SOX3P41225 AL035425.3-201ENST00000564206 4996 ntBASIC2.69□□□□□ -1.98
SOX3P41225 ZNF680P1-201ENST00000436625 1469 ntBASIC2.69□□□□□ -1.98
SOX3P41225 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
SOX3P41225 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms