Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC012493.3-201ENST00000604494 112 ntBASIC2.09□□□□□ -2.07
LSM1O15116 AC007938.3-201ENST00000604965 623 ntBASIC2.09□□□□□ -2.07
LSM1O15116 RNU6-88P-201ENST00000606801 100 ntBASIC2.09□□□□□ -2.07
LSM1O15116 MIR6134-201ENST00000617606 109 ntBASIC2.09□□□□□ -2.07
LSM1O15116 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.09□□□□□ -2.07
LSM1O15116 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.09□□□□□ -2.08
LSM1O15116 RNA5SP289-201ENST00000362332 137 ntBASIC2.08□□□□□ -2.08
LSM1O15116 RNU1-91P-201ENST00000364746 163 ntBASIC2.08□□□□□ -2.08
LSM1O15116 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC2.08□□□□□ -2.08
LSM1O15116 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
LSM1O15116 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.08□□□□□ -2.08
LSM1O15116 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LSM1O15116 RN7SKP158-201ENST00000410453 326 ntBASIC2.08□□□□□ -2.08
LSM1O15116 USP9YP6-201ENST00000413550 854 ntBASIC2.08□□□□□ -2.08
LSM1O15116 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.08□□□□□ -2.08
LSM1O15116 AC104651.1-201ENST00000427559 735 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC2.08□□□□□ -2.08
LSM1O15116 AL591719.1-201ENST00000444669 744 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AL118520.1-201ENST00000450770 291 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AC018437.1-201ENST00000492214 406 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.08□□□□□ -2.08
LSM1O15116 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.08□□□□□ -2.08
LSM1O15116 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LSM1O15116 DEFB108A-201ENST00000530110 222 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC2.08□□□□□ -2.08
LSM1O15116 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.08□□□□□ -2.08
LSM1O15116 AL355472.4-201ENST00000610233 626 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AL109620.1-201ENST00000618738 1197 ntBASIC2.08□□□□□ -2.08
LSM1O15116 SCARNA15.3-201ENST00000626315 122 ntBASIC2.08□□□□□ -2.08
LSM1O15116 SCARNA4.1-201ENST00000628597 123 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AC092125.1-201ENST00000562568 1995 ntBASIC2.08□□□□□ -2.08
LSM1O15116 AC006020.1-201ENST00000420179 1854 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AL136360.1-201ENST00000503377 1900 ntBASIC2.07□□□□□ -2.08
LSM1O15116 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
LSM1O15116 RNU5A-8P-201ENST00000364102 114 ntBASIC2.07□□□□□ -2.08
LSM1O15116 RNU4-68P-201ENST00000364314 141 ntBASIC2.07□□□□□ -2.08
LSM1O15116 RNU6-748P-201ENST00000384648 107 ntBASIC2.07□□□□□ -2.08
LSM1O15116 MIR634-201ENST00000385208 97 ntBASIC2.07□□□□□ -2.08
LSM1O15116 NDUFS5P1-201ENST00000405668 289 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.07□□□□□ -2.08
LSM1O15116 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 AC106872.3-201ENST00000495104 446 ntBASIC2.07□□□□□ -2.08
LSM1O15116 HMGB3P17-201ENST00000504195 649 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC093281.2-201ENST00000510153 597 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC114781.4-201ENST00000513707 639 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.07□□□□□ -2.08
LSM1O15116 AC009902.1-201ENST00000519351 183 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.07□□□□□ -2.08
LSM1O15116 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 AC087276.1-201ENST00000529659 480 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.07□□□□□ -2.08
LSM1O15116 AP002770.2-201ENST00000543613 532 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.07□□□□□ -2.08
LSM1O15116 AC009097.3-201ENST00000563557 1018 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC2.07□□□□□ -2.08
LSM1O15116 MIR544B-201ENST00000582372 78 ntBASIC2.07□□□□□ -2.08
LSM1O15116 MIR3935-201ENST00000583472 104 ntBASIC2.07□□□□□ -2.08
LSM1O15116 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.07□□□□□ -2.08
LSM1O15116 AC007229.1-201ENST00000590455 412 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC025165.5-201ENST00000602802 578 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC103710.1-201ENST00000610003 901 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC138627.2-201ENST00000624202 601 ntBASIC2.07□□□□□ -2.08
LSM1O15116 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.07□□□□□ -2.08
LSM1O15116 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.06□□□□□ -2.08
LSM1O15116 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LSM1O15116 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.06□□□□□ -2.08
LSM1O15116 SNORA4.1-201ENST00000364263 144 ntBASIC2.06□□□□□ -2.08
LSM1O15116 RNU6-723P-201ENST00000383973 107 ntBASIC2.06□□□□□ -2.08
LSM1O15116 Y_RNA.510-201ENST00000384511 114 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.06□□□□□ -2.08
LSM1O15116 AL139413.1-201ENST00000421309 217 ntBASIC2.06□□□□□ -2.08
LSM1O15116 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.06□□□□□ -2.08
LSM1O15116 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.06□□□□□ -2.08
LSM1O15116 AL031313.1-201ENST00000448435 256 ntBASIC2.06□□□□□ -2.08
LSM1O15116 EXOSC3P1-201ENST00000448649 500 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.06□□□□□ -2.08
LSM1O15116 AC117503.1-201ENST00000472241 394 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AL049873.1-201ENST00000480540 376 ntBASIC2.06□□□□□ -2.08
LSM1O15116 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.06□□□□□ -2.08
LSM1O15116 RNU6-581P-201ENST00000516214 105 ntBASIC2.06□□□□□ -2.08
LSM1O15116 SCARNA16.3-201ENST00000516595 184 ntBASIC2.06□□□□□ -2.08
LSM1O15116 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
LSM1O15116 AP003122.3-201ENST00000526316 255 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AC084851.1-201ENST00000529105 249 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.06□□□□□ -2.08
LSM1O15116 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.06□□□□□ -2.08
LSM1O15116 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.06□□□□□ -2.08
LSM1O15116 AC068790.3-201ENST00000602988 553 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AC072039.2-201ENST00000608883 439 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.06□□□□□ -2.08
LSM1O15116 MIR6132-201ENST00000622083 109 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AP000720.1-201ENST00000625091 483 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AC099654.9-201ENST00000637055 678 ntBASIC2.06□□□□□ -2.08
LSM1O15116 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LSM1O15116 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
LSM1O15116 MTND5P6-201ENST00000422338 1798 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms